Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,307,786 – 5,307,904 |
Length | 118 |
Max. P | 0.557019 |
Location | 5,307,786 – 5,307,904 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 69.14 |
Mean single sequence MFE | -20.10 |
Consensus MFE | -9.41 |
Energy contribution | -11.72 |
Covariance contribution | 2.31 |
Combinations/Pair | 1.14 |
Mean z-score | -1.79 |
Structure conservation index | 0.47 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.557019 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5307786 118 - 20766785 UCGGCCUAACAUAAGUUACAUAAUUAUCUGUAUCUAUAUUGUGAAUACUUUGAUUAAAAUAACUAGUUGAUAG--AAACUAGUUAAGCAGUGUCACGAAAUCUUUUUAAUUAGGCCGAAA (((((((((....((.((((........)))).))...((((((.((((((.....)).(((((((((.....--.)))))))))...))))))))))...........))))))))).. ( -32.00) >DroSec_CAF1 24732 91 - 1 ---------------------------CUUUAUCUAUACUGUGAAUACUGUGAUUAAAAUAACUAGUUGAUAG--AAACUAGUUAAGCAGUGCCACGAAAUCUUUUUAAUUGGGCCCAAA ---------------------------............((((..((((((........(((((((((.....--.))))))))).)))))).))))............(((....))). ( -17.10) >DroSim_CAF1 25038 118 - 1 UUAAACUAACAUAAGUUACAUAAUUAUCUUUAUCUAUACUGUGAAUACUGUGAUUAAAAUAACUAGUUGAUAG--AAACUAGUUAAGCAGUGCCACGAAAUCUCUUUAAUUAGUCCCAAA ....(((((....(((((.((((......)))).)).)))(((..((((((........(((((((((.....--.))))))))).)))))).))).............)))))...... ( -18.70) >DroEre_CAF1 25519 92 - 1 ---------------------------CUUUAC-CAUACUGUGGUUACUUUAAAGAAAAUAACUAGUUUGAAAACCAACAAGUUAACCCGCACAACGGCAUCAUUUUAAUUAGGCGCAAA ---------------------------......-.....((((.(((..((((((....(((((.(((........))).)))))..(((.....))).....)))))).))).)))).. ( -12.60) >consensus ___________________________CUUUAUCUAUACUGUGAAUACUGUGAUUAAAAUAACUAGUUGAUAG__AAACUAGUUAAGCAGUGCCACGAAAUCUUUUUAAUUAGGCCCAAA ......................................((((((.((((((........(((((((((........))))))))).))))))))))))...................... ( -9.41 = -11.72 + 2.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:22 2006