Locus 1372

Sequence ID 2R_DroMel_CAF1
Location 5,298,147 – 5,298,247
Length 100
Max. P 0.983972
window2366

overview

Window 6

Location 5,298,147 – 5,298,247
Length 100
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 73.11
Mean single sequence MFE -32.04
Consensus MFE -18.76
Energy contribution -20.76
Covariance contribution 2.00
Combinations/Pair 1.00
Mean z-score -2.15
Structure conservation index 0.59
SVM decision value 1.96
SVM RNA-class probability 0.983972
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5298147 100 - 20766785
ACGAGGUGUGUGCGGUGUGUUUGGU-GUGCAUAUCUCGGUGUUUGCAUCUGUGGGCUACCGCCCAUACGGCCCAACCACGCAAUCACCCAAC---CAUCCAACC
..((((((((..((.(......).)-)..))))))))((((.((((...(((((((....))))))).((.....))..)))).))))....---......... ( -38.60)
>DroSec_CAF1 15166 84 - 1
ACGAGGUGUGUGCGGUGUGUUUGGU-GUGCAUAUCUCGGUGUUUGCAUCUGUGGGCUACCGCCCAUAUAGCCCAA----------------A---CAUCCAGCC
..((((((((..((.(......).)-)..))))))))((((((((..(.(((((((....))))))).)...)))----------------)---))))..... ( -34.80)
>DroSim_CAF1 15160 92 - 1
ACGAGGUGUGUGCGGUGUGUUUGGU-GUGCAUAUCUCGGUGUUUGCAUCUGUGGGCUACCGCCCAUACAGCCCAACC--------ACCCAAC---CAUCCAACC
..((((((((..((.(......).)-)..))))))))((((.(((..(.(((((((....))))))).)...))).)--------)))....---......... ( -33.20)
>DroEre_CAF1 16496 83 - 1
ACGAGGUGUGUGCGGUGUGUUUAGU-GUGCAUAUCUCGGUGUGUGCAUCUGUGGGCUGCCACCCA---------ACC--------GCCCAUG---CAGACAGCC
.(((((((((..((.((....)).)-)..))))))))).(((.((((....(((((.(.......---------.).--------)))))))---)).)))... ( -34.70)
>DroAna_CAF1 10525 84 - 1
AUGAGGUGUGUG---UGUGUUUUCCAUUGCAUAUCUCGGUGUUUGCAUCUG-------CCACCCA-ACCAACAUACU--------ACCCAUCUCCCAUGG-AAC
..((((((((((---.(((.....)))))))))))))((((...((....)-------)))))..-...........--------..((((.....))))-... ( -18.90)
>consensus
ACGAGGUGUGUGCGGUGUGUUUGGU_GUGCAUAUCUCGGUGUUUGCAUCUGUGGGCUACCGCCCAUACAGCCCAACC________ACCCAAC___CAUCCAACC
..(((((((((((.............)))))))))))((((....))))(((((((....)))))))..................................... (-18.76 = -20.76 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:21 2006