Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,294,719 – 5,294,815 |
Length | 96 |
Max. P | 0.846510 |
Location | 5,294,719 – 5,294,815 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 88.14 |
Mean single sequence MFE | -27.78 |
Consensus MFE | -22.14 |
Energy contribution | -23.08 |
Covariance contribution | 0.95 |
Combinations/Pair | 1.21 |
Mean z-score | -2.84 |
Structure conservation index | 0.80 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.846510 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5294719 96 - 20766785 UUUUAUAGCUUCAAAGGCGUGGAAAACACGCCGGAAAAUCUCCU--UAUCGGAGUCCCACUCCUCCGGACAACCACUAAUCUUGGAGCAUUUAGUUUU .......(((((((.((((((.....))))))(((.....))).--..((((((........)))))).............))))))).......... ( -30.50) >DroSec_CAF1 11777 96 - 1 UUUUAUGGCUUCAAAGGCGUGGAAAACACGCCGGAAAAUCCCCU--UAUCGGAGUCCCACUCUUUCGGACAACCACUAAUCUUGGAGCAUUUAGUUUU .......(((((((.((((((.....))))))((....(((...--....)))((((.........))))..)).......))))))).......... ( -28.80) >DroSim_CAF1 11765 96 - 1 UUUUAUGGCUUCAAAGGCGUGGAAAACACGCCGGAAAAUCCCCU--UAUCGGAGUCCCACUCCUUCGGACAACCACUAAUCUUGGAGCAUUUAGUUUU .......(((((((.((((((.....))))))((....(((...--....)))((((.........))))..)).......))))))).......... ( -28.80) >DroEre_CAF1 13158 96 - 1 UUUUACGGCUUCAAAGGCGUGGAAAACACGCCGGAAAAUCCCCU--UAUCGGAGUCCCACUCCUCCGGACAACCACUAAUCUUGGAGCAUUUAGUUUU .......(((((((.((((((.....))))))((.....))...--..((((((........)))))).............))))))).......... ( -29.10) >DroYak_CAF1 7369 96 - 1 UUUUAUGGCUUCAAAGGCGUGGAAAACACGCCGGAAAAUCCCCU--UAUCGGAGUCCCACUCCUCCGGACAACCACUAAUCUUGGAGCAUUUAGUUUU .......(((((((.((((((.....))))))((.....))...--..((((((........)))))).............))))))).......... ( -29.10) >DroAna_CAF1 6815 91 - 1 UUUUAUGGCUUCGAAGGCGUGGAAAACAUGCCCGCAAAUCCCUUCCUGUCG---UC-UACGUAGCCA---GUCCACUAAUUCUCCUGCAUUUAGUUUA .....(((((.((.(((((.((((....((....))......))))...))---))-).)).)))))---....(((((...........)))))... ( -20.40) >consensus UUUUAUGGCUUCAAAGGCGUGGAAAACACGCCGGAAAAUCCCCU__UAUCGGAGUCCCACUCCUCCGGACAACCACUAAUCUUGGAGCAUUUAGUUUU .......(((((((.((((((.....))))))................((((((........)))))).............))))))).......... (-22.14 = -23.08 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:20 2006