Locus 1369

Sequence ID 2R_DroMel_CAF1
Location 5,293,124 – 5,293,227
Length 103
Max. P 0.563068
window2362

overview

Window 2

Location 5,293,124 – 5,293,227
Length 103
Sequences 4
Columns 103
Reading direction forward
Mean pairwise identity 80.26
Mean single sequence MFE -32.35
Consensus MFE -19.99
Energy contribution -20.36
Covariance contribution 0.37
Combinations/Pair 1.17
Mean z-score -1.76
Structure conservation index 0.62
SVM decision value 0.06
SVM RNA-class probability 0.563068
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5293124 103 + 20766785
GUAUUGGGAUUGGGUUUUUGGUUUUCGGCUUAGGGGUUUCUCUUCUGAAGUUGAAACAAGAACUGGAACUGGGCCAAAGCGGAAACUGCUUGGCUGCCGAAAC
...((((..((.((((((((...(((((((((((((.....)))))).))))))).)))))))).))....((((((.(((....).)))))))).))))... ( -36.50)
>DroSec_CAF1 10106 103 + 1
GGUCUGGGAUUGGGUUUUUGGUUUUCGGUUUAGGGGCUUUGCUUCUGGAGUUGAAACAGGAACUGGAACUGGGCCAAAGCGGAAACUGCUUGGCUGGCGAAAC
((((..(..((.((((((((...((((((((((((((...))))))))).))))).)))))))).)).)..)))).(((((....).))))............ ( -35.30)
>DroSim_CAF1 10087 103 + 1
GGUCUGGGACUGGGUUUUUGGUUUUCGGUUUAGGGGUUUUUCUUCUGGAGUUGAAACAGGAACUGGAAGUGGGCCAAAGCGGAAACUGCUUGGCUGCCGAAAC
(((.....(((.((((((((...(((((((((((((.....)))))))).))))).))))))))...))).((((((.(((....).)))))))))))..... ( -32.20)
>DroEre_CAF1 11550 81 + 1
GGAUUGGG------UUUUCGGCAUUCGGUUUAGGG--UUUUCUGCUGGA------------GCUGGAACUGGGCCAAAACGG--ACUGCUUGGUUGCCGAAAC
........------.((((((((((((((((..((--(.....))).))------------))))))((..(((........--...)))..)))))))))). ( -25.40)
>consensus
GGACUGGGAUUGGGUUUUUGGUUUUCGGUUUAGGGGUUUUUCUUCUGGAGUUGAAACAGGAACUGGAACUGGGCCAAAGCGGAAACUGCUUGGCUGCCGAAAC
...............(((((((.(((((((((((((.....))))))).............))))))....((((((.((((...))))))))))))))))). (-19.99 = -20.36 +   0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:18 2006