Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,247,508 – 5,247,616 |
Length | 108 |
Max. P | 0.552670 |
Location | 5,247,508 – 5,247,616 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.26 |
Mean single sequence MFE | -19.94 |
Consensus MFE | -1.30 |
Energy contribution | -3.30 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.19 |
Mean z-score | -1.46 |
Structure conservation index | 0.07 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.552670 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5247508 108 - 20766785 GUAAACAACACAACCGUUUCAGUUUAAUUCCGAAAUCAAAAUCGUAUUUUGGUAGUCUGCAAGCUCAAACGGA-----------AUGAAAAUCAGUUUUCAAAUUAAAGU-UGCGUAUUA (((..((((....((((((.(((((.(((((((((((......).))))))).)))....))))).)))))).-----------.((((((....)))))).......))-))..))).. ( -22.20) >DroSec_CAF1 115540 109 - 1 GUAAACAACACAACCGUUUCAGUUUAAUUCCGAAAUCAAAAUCGUAUUUUGCUAGUCUGCAAUCUGAAACGUA-----------AUGAAAAUCAGUUUUCAAAUUAAAGUUUGUGUAUUA .......((((((.((((((((........(((........)))....((((......)))).))))))))..-----------.((((((....)))))).........)))))).... ( -22.10) >DroSim_CAF1 101847 109 - 1 GUAAACAACACAACCGUUUCAGUUUAAUUCCGAAAUCAAAAUCGUAUUUUGCUAGUCUGCAAGCUGAAACGUA-----------AUGAAAAUCAGUUUUCAAAUUAAAGUUUGUGUAUUA .......((((((.(((((((((((.....(((........)))......((......)))))))))))))..-----------.((((((....)))))).........)))))).... ( -24.30) >DroEre_CAF1 116378 106 - 1 CUAAACUACACAUUCGUUUCAGUUAAACUUCGAAAUCAAAAUCGCAUUUUGGCAGCCCGCAAGUUCAAAGCGAGCAAAA-----------AUCA-CUUUCAAAUUAAAGUUUA--UACUU .((((((..............((((((...(((........)))...)))))).((.(((.........))).))....-----------....-............))))))--..... ( -13.90) >DroYak_CAF1 117331 118 - 1 GUGAAGUACACAUUCGUUUCAGGUUAUUUUCAAAAUCAAAAUCACAUUUUGGUAGCCUGCAAGUUUAAAGAUAGCAAAAACAUAAUGAAAAUCAGAUUUCAAAUUAAUGUUUG--UAUUU ...(((((((((((.((((((((((((...((((((.........))))))))))))))...(((.......)))..))))....(((((......)))))....)))))..)--))))) ( -17.20) >consensus GUAAACAACACAACCGUUUCAGUUUAAUUCCGAAAUCAAAAUCGUAUUUUGGUAGUCUGCAAGCUCAAACGUA___________AUGAAAAUCAGUUUUCAAAUUAAAGUUUG_GUAUUA .(((((.........(((((((.......((((((((......).)))))))....))).)))).....................((((((....)))))).......)))))....... ( -1.30 = -3.30 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:04 2006