Locus 1360

Sequence ID 2R_DroMel_CAF1
Location 5,238,036 – 5,238,127
Length 91
Max. P 0.571924
window2347

overview

Window 7

Location 5,238,036 – 5,238,127
Length 91
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 84.43
Mean single sequence MFE -27.15
Consensus MFE -17.92
Energy contribution -19.00
Covariance contribution 1.08
Combinations/Pair 1.15
Mean z-score -2.65
Structure conservation index 0.66
SVM decision value 0.08
SVM RNA-class probability 0.571924
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5238036 91 + 20766785
ACCCUAUUCUCUGAGUGUACUCAUAUUCAUACUCAGAAAUGGAUGUGAGUG--GGCGACAGGUAACUCCCAUUCAUUUCCUGGUUCGAGCUCA
(((......(((((((((..........)))))))))...(((.(((((((--((.(........).))))))))).))).)))......... ( -28.50)
>DroSec_CAF1 113594 91 + 1
ACCCUAUUCUCUGAGUGUACUCAUAUUCAUACUCAGAAAUGGAUGUGAGUG--GGCGACAGGUAGCUCCCAUUCAUUUCCUGGUUCGAGCUCA
(((......(((((((((..........)))))))))...(((.(((((((--((.(........).))))))))).))).)))......... ( -28.70)
>DroSim_CAF1 99910 91 + 1
ACCCUAUUCUCUGAGUGUACUCAUAUUCAUACUCAGAAAUGGAUGUGAGUG--GGCGACAGGUAACUCCCAUUCAUUUCCUGGUUCGAGCUCA
(((......(((((((((..........)))))))))...(((.(((((((--((.(........).))))))))).))).)))......... ( -28.50)
>DroEre_CAF1 114384 91 + 1
CUCCUGUUUUCUGAGUGUACUCAUAUUCAUACUCAGAAAUGGUUGUGAGUG--GGCGACAGGUAACUCCCAUUCAUUUCCUGGUUCGAGCUCA
(((....(((((((((((..........))))))))))).((..(((((((--((.(........).)))))))))..))......))).... ( -29.30)
>DroYak_CAF1 115374 90 + 1
CA-CUCUUCUCUGAGUGUACUCAUAUUCAUACUCAGAAAUGGAUGUGAGAG--GGCGACAGGUAACUCCCAUUCAUUUCCUGGUUCGAGCUCA
((-(((......)))))..(((((((((((........))))))))))).(--(((..((((................))))......)))). ( -27.39)
>DroAna_CAF1 130343 74 + 1
-------------------UUCAUACUCACACCCACACCUGGCUGGGAGUGCAGGUAGCUGGUAGCUCCCAUUCAUUUCCUGGUUCGAGCUCA
-------------------......(((..(((......((..(((((((.(((....)))...)))))))..))......)))..))).... ( -20.50)
>consensus
ACCCUAUUCUCUGAGUGUACUCAUAUUCAUACUCAGAAAUGGAUGUGAGUG__GGCGACAGGUAACUCCCAUUCAUUUCCUGGUUCGAGCUCA
...........((((....))))..(((..(((..((((((((((.((((....((.....)).)))).))))))))))..)))..))).... (-17.92 = -19.00 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:03 2006