Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,398,309 – 1,398,506 |
Length | 197 |
Max. P | 0.986587 |
Location | 1,398,309 – 1,398,427 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.31 |
Mean single sequence MFE | -32.28 |
Consensus MFE | -26.26 |
Energy contribution | -25.90 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.17 |
Mean z-score | -2.38 |
Structure conservation index | 0.81 |
SVM decision value | 2.05 |
SVM RNA-class probability | 0.986587 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1398309 118 + 20766785 UUGACAAAUGGAAAUGUCAAAAUGAAAAAUUAACUGAAAAUCAACAGCUACAGCAGCAGCACUUU--CGGUUGUGGGGUCGCGCCAGCAAAAGGCUGCGAAGAGCGGCCGACAAUUGAAA ((((((........))))))..........................(((.(....).)))...((--(((((((.((.((((.(((((.....)))).)....)))))).))))))))). ( -31.30) >DroSec_CAF1 24113 120 + 1 UUGACAAAUGGAAAUGUCAAAAUGAAAAAUUAACUGAAAAUCAACAGCUACAGCAGCAGCACUUUAUGGGGUGCGGGGUCGCGCCAGCAAAAGGCUGCGAAGAGCGGCCGACAAUUGAAA ((((((........))))))....................((((..(((...((.((.((((((....))))))...)).))...)))....((((((.....)))))).....)))).. ( -33.90) >DroSim_CAF1 29063 120 + 1 UUGACAAAUGGAAAUGUCAAAAUGAAAAAUUAACUGAAAAUCAACAGCUACAGCAGCAGCACUUUAUGGGGUGCGGGGUCGCGCCAGCAAAAGGCUGCGAAGAGCGGCCGACAAUUGAAA ((((((........))))))....................((((..(((...((.((.((((((....))))))...)).))...)))....((((((.....)))))).....)))).. ( -33.90) >DroEre_CAF1 23075 117 + 1 UUGACAAAUGGAAAUGUCAAAAUGAAAAAUUAACUGAAAAUCAACAGCUACGGCAGCAGCAGUU---CGGUUGAGAGGUCGCGCCAGUAAAAGGCUGCGAAGAGCGACCGACAAUUGAAA ((((((........)))))).........(((((((((........((....))........))---)))))))..((((((.(((((.....)))).)....))))))........... ( -32.69) >DroYak_CAF1 25044 119 + 1 UUGACAAAUGGAAAUGUCAAAAUGAAAAAUUAACUGAAAAUCAACAGCUAACACGGCAGCAGUUCC-CGGUUGAGGGGUCGCGCCAGCAAAAGGCUGCGAAGAGCGACCGACAAUUGAAA ((((((........))))))..........................(((.....)))..(((((..-((((((.....(((((((.......))).))))....))))))..)))))... ( -29.60) >consensus UUGACAAAUGGAAAUGUCAAAAUGAAAAAUUAACUGAAAAUCAACAGCUACAGCAGCAGCACUUU__CGGUUGAGGGGUCGCGCCAGCAAAAGGCUGCGAAGAGCGGCCGACAAUUGAAA ((((((........))))))....................((((..(((.....))).(((((......)))))..((((((.(((((.....)))).)....)))))).....)))).. (-26.26 = -25.90 + -0.36)
Location | 1,398,309 – 1,398,427 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.31 |
Mean single sequence MFE | -31.18 |
Consensus MFE | -24.40 |
Energy contribution | -24.40 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.07 |
Mean z-score | -2.41 |
Structure conservation index | 0.78 |
SVM decision value | 1.45 |
SVM RNA-class probability | 0.955288 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1398309 118 - 20766785 UUUCAAUUGUCGGCCGCUCUUCGCAGCCUUUUGCUGGCGCGACCCCACAACCG--AAAGUGCUGCUGCUGUAGCUGUUGAUUUUCAGUUAAUUUUUCAUUUUGACAUUUCCAUUUGUCAA ........(((((((((.....))(((.....)))))).)))).....(((.(--((((((((((....))))).....)))))).)))...........((((((........)))))) ( -28.70) >DroSec_CAF1 24113 120 - 1 UUUCAAUUGUCGGCCGCUCUUCGCAGCCUUUUGCUGGCGCGACCCCGCACCCCAUAAAGUGCUGCUGCUGUAGCUGUUGAUUUUCAGUUAAUUUUUCAUUUUGACAUUUCCAUUUGUCAA ....((((((((((.((((..((((((((((....((.(((....))).))....)))).))))).)..).))).)))))....)))))...........((((((........)))))) ( -32.60) >DroSim_CAF1 29063 120 - 1 UUUCAAUUGUCGGCCGCUCUUCGCAGCCUUUUGCUGGCGCGACCCCGCACCCCAUAAAGUGCUGCUGCUGUAGCUGUUGAUUUUCAGUUAAUUUUUCAUUUUGACAUUUCCAUUUGUCAA ....((((((((((.((((..((((((((((....((.(((....))).))....)))).))))).)..).))).)))))....)))))...........((((((........)))))) ( -32.60) >DroEre_CAF1 23075 117 - 1 UUUCAAUUGUCGGUCGCUCUUCGCAGCCUUUUACUGGCGCGACCUCUCAACCG---AACUGCUGCUGCCGUAGCUGUUGAUUUUCAGUUAAUUUUUCAUUUUGACAUUUCCAUUUGUCAA ..(((((..(((((......((((.(((.......))))))).......))))---)...(((((....))))).)))))....................((((((........)))))) ( -28.92) >DroYak_CAF1 25044 119 - 1 UUUCAAUUGUCGGUCGCUCUUCGCAGCCUUUUGCUGGCGCGACCCCUCAACCG-GGAACUGCUGCCGUGUUAGCUGUUGAUUUUCAGUUAAUUUUUCAUUUUGACAUUUCCAUUUGUCAA ..........((((.((...((((.(((.......))))))).(((......)-))....)).)))).((((((((........))))))))........((((((........)))))) ( -33.10) >consensus UUUCAAUUGUCGGCCGCUCUUCGCAGCCUUUUGCUGGCGCGACCCCGCAACCG__AAAGUGCUGCUGCUGUAGCUGUUGAUUUUCAGUUAAUUUUUCAUUUUGACAUUUCCAUUUGUCAA ..........((((.((.((((((.(((.......)))))))...............)).)).))))...((((((........))))))..........((((((........)))))) (-24.40 = -24.40 + 0.00)
Location | 1,398,349 – 1,398,466 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.02 |
Mean single sequence MFE | -37.56 |
Consensus MFE | -29.60 |
Energy contribution | -29.28 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.21 |
Mean z-score | -1.53 |
Structure conservation index | 0.79 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.629931 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1398349 117 + 20766785 UCAACAGCUACAGCAGCAGCACUUU--CGGUUGUGGGGUCGCGCCAGCAAAAGGCUGCGAAGAGCGGCCGACAAUUGAAAAUGUCAAAAUUCACGAGCCCAGUCAA-AGCGUGGAGAGGU .......((((.((.(((((.....--..)))))(((.((((....))....((((((.....))))))((((........)))).........)).)))......-.))))))...... ( -35.80) >DroSec_CAF1 24153 120 + 1 UCAACAGCUACAGCAGCAGCACUUUAUGGGGUGCGGGGUCGCGCCAGCAAAAGGCUGCGAAGAGCGGCCGACAAUUGAAAAUGUCAAAAUUCACGAGCCCAGCCAAAAGUGUGGAGAGGU ((..(.(((.....))).(((((((.(((((((((....)))))).((....((((((.....))))))((((........))))...........))....)))))))))))..))... ( -40.30) >DroSim_CAF1 29103 120 + 1 UCAACAGCUACAGCAGCAGCACUUUAUGGGGUGCGGGGUCGCGCCAGCAAAAGGCUGCGAAGAGCGGCCGACAAUUGAAAAUGUCAAAAUUCACGAGCCCAGCCAAAAGUGUGGAGAGGU ((..(.(((.....))).(((((((.(((((((((....)))))).((....((((((.....))))))((((........))))...........))....)))))))))))..))... ( -40.30) >DroEre_CAF1 23115 116 + 1 UCAACAGCUACGGCAGCAGCAGUU---CGGUUGAGAGGUCGCGCCAGUAAAAGGCUGCGAAGAGCGACCGACAAUUGAAAAUGUCAAAAUUCACGAGCCCAACCAA-AGCGUGGAUAGGU ......(((..((((....(((((---((((((.....(((((((.......))).))))....)))))))..))))....))))...(((((((...........-..))))))).))) ( -34.22) >DroYak_CAF1 25084 115 + 1 UCAACAGCUAACACGGCAGCAGUUCC-CGGUUGAGGGGUCGCGCCAGCAAAAGGCUGCGAAGAGCGACCGACAAUUGAAAAUGUCAAAAUUCACGAGCUCAGCCAA-AGCUUGGU---GA ...........(((((((.(((((..-((((((.....(((((((.......))).))))....))))))..)))))....))))........((((((.......-))))))))---). ( -37.20) >consensus UCAACAGCUACAGCAGCAGCACUUU__CGGUUGAGGGGUCGCGCCAGCAAAAGGCUGCGAAGAGCGGCCGACAAUUGAAAAUGUCAAAAUUCACGAGCCCAGCCAA_AGCGUGGAGAGGU .......((((.((....))........(((((.((((((((.(((((.....)))).)....))))))((((........))))............)))))))......))))...... (-29.60 = -29.28 + -0.32)
Location | 1,398,387 – 1,398,506 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.31 |
Mean single sequence MFE | -31.46 |
Consensus MFE | -21.27 |
Energy contribution | -21.38 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.14 |
Mean z-score | -2.04 |
Structure conservation index | 0.68 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.619249 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1398387 119 + 20766785 GCGCCAGCAAAAGGCUGCGAAGAGCGGCCGACAAUUGAAAAUGUCAAAAUUCACGAGCCCAGUCAA-AGCGUGGAGAGGUAACAGCCAUCCUCACAGCUAAACACUGUGAAAAAUUUUGU ......((((((((((((.....))))))((((........))))....(((((((......))..-((((((..(((((....))).))..))).))).......)))))...)))))) ( -34.50) >DroSec_CAF1 24193 119 + 1 GCGCCAGCAAAAGGCUGCGAAGAGCGGCCGACAAUUGAAAAUGUCAAAAUUCACGAGCCCAGCCAAAAGUGUGGAGAGGUAACAGCCAUCCUCACGGCUAAACACUGUGAAAAAUU-GAU ((....))....((((((.....))))))((((........))))....((((((.....((((....(((.(((..(((....))).))).)))))))......)))))).....-... ( -36.70) >DroSim_CAF1 29143 119 + 1 GCGCCAGCAAAAGGCUGCGAAGAGCGGCCGACAAUUGAAAAUGUCAAAAUUCACGAGCCCAGCCAAAAGUGUGGAGAGGUAACAGCCAUCCUCACAGCUAAACACUGUGAAAAAUU-GAU ((....))....((((((.....))))))((((........))))....((((((.....(((.....(((.(((..(((....))).))).))).)))......)))))).....-... ( -33.00) >DroEre_CAF1 23152 117 + 1 GCGCCAGUAAAAGGCUGCGAAGAGCGACCGACAAUUGAAAAUGUCAAAAUUCACGAGCCCAACCAA-AGCGUGGAUAGGU-AAAGCCAUCCUAACGGCGGAACACUGCGAGAAAUG-AAU .(((.(((....((((((.....)).(((((((........))))...(((((((...........-..))))))).)))-..)))).(((.......)))..)))))).......-... ( -28.12) >DroYak_CAF1 25123 108 + 1 GCGCCAGCAAAAGGCUGCGAAGAGCGACCGACAAUUGAAAAUGUCAAAAUUCACGAGCUCAGCCAA-AGCUUGGU---GA-ACAGCC------ACAGCAAAACACUGUACAAAAUU-AAU ((....))....(((((............((((........))))....((((((((((.......-))))).))---))-))))))------((((.......))))........-... ( -25.00) >consensus GCGCCAGCAAAAGGCUGCGAAGAGCGGCCGACAAUUGAAAAUGUCAAAAUUCACGAGCCCAGCCAA_AGCGUGGAGAGGUAACAGCCAUCCUCACAGCUAAACACUGUGAAAAAUU_AAU ((.(((((....((((((.....))))))((((........)))).......................)).))).((((..........))))...))...................... (-21.27 = -21.38 + 0.11)
Location | 1,398,387 – 1,398,506 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.31 |
Mean single sequence MFE | -34.10 |
Consensus MFE | -26.96 |
Energy contribution | -28.96 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.07 |
Mean z-score | -1.72 |
Structure conservation index | 0.79 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.762738 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1398387 119 - 20766785 ACAAAAUUUUUCACAGUGUUUAGCUGUGAGGAUGGCUGUUACCUCUCCACGCU-UUGACUGGGCUCGUGAAUUUUGACAUUUUCAAUUGUCGGCCGCUCUUCGCAGCCUUUUGCUGGCGC .............(((((....(((((((((((((((..........((((((-(.....))))..)))......((((........))))))))).))))))))))....))))).... ( -36.60) >DroSec_CAF1 24193 119 - 1 AUC-AAUUUUUCACAGUGUUUAGCCGUGAGGAUGGCUGUUACCUCUCCACACUUUUGGCUGGGCUCGUGAAUUUUGACAUUUUCAAUUGUCGGCCGCUCUUCGCAGCCUUUUGCUGGCGC ...-.....(((((.(.(((((((((.(((..(((..(......).)))..))).))))))))).))))))...(((((........)))))(((((.....))(((.....)))))).. ( -35.30) >DroSim_CAF1 29143 119 - 1 AUC-AAUUUUUCACAGUGUUUAGCUGUGAGGAUGGCUGUUACCUCUCCACACUUUUGGCUGGGCUCGUGAAUUUUGACAUUUUCAAUUGUCGGCCGCUCUUCGCAGCCUUUUGCUGGCGC ...-.........(((((....(((((((((((((((....(((..(((......)))..)))............((((........))))))))).))))))))))....))))).... ( -37.40) >DroEre_CAF1 23152 117 - 1 AUU-CAUUUCUCGCAGUGUUCCGCCGUUAGGAUGGCUUU-ACCUAUCCACGCU-UUGGUUGGGCUCGUGAAUUUUGACAUUUUCAAUUGUCGGUCGCUCUUCGCAGCCUUUUACUGGCGC ...-.................((((....((((((....-..)))))).....-..(((.(((((.(((((..((((((........))))))......))))))))))...))))))). ( -31.50) >DroYak_CAF1 25123 108 - 1 AUU-AAUUUUGUACAGUGUUUUGCUGU------GGCUGU-UC---ACCAAGCU-UUGGCUGAGCUCGUGAAUUUUGACAUUUUCAAUUGUCGGUCGCUCUUCGCAGCCUUUUGCUGGCGC ...-......((.(((((....(((((------((..((-((---((((....-.))).)))))..((((....(((((........))))).))))...)))))))....))))))).. ( -29.70) >consensus AUC_AAUUUUUCACAGUGUUUAGCUGUGAGGAUGGCUGUUACCUCUCCACGCU_UUGGCUGGGCUCGUGAAUUUUGACAUUUUCAAUUGUCGGCCGCUCUUCGCAGCCUUUUGCUGGCGC .............(((((....(((((((((((((((....(((..(((......)))..)))............((((........))))))))).))))))))))....))))).... (-26.96 = -28.96 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:01 2006