Locus 1358

Sequence ID 2R_DroMel_CAF1
Location 5,236,018 – 5,236,109
Length 91
Max. P 0.605126
window2345

overview

Window 5

Location 5,236,018 – 5,236,109
Length 91
Sequences 4
Columns 102
Reading direction forward
Mean pairwise identity 82.73
Mean single sequence MFE -20.76
Consensus MFE -15.09
Energy contribution -15.28
Covariance contribution 0.19
Combinations/Pair 1.13
Mean z-score -1.58
Structure conservation index 0.73
SVM decision value 0.14
SVM RNA-class probability 0.605126
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5236018 91 + 20766785
AAUCUUAACGGUGCAUUGAUAUCAAUCCAGGUGUAGU-----------AUUGCACUUCGUUAAGCCAUUUCAUCAGUCAGUAAUUCCAUUGGCUUGACAUUC
.........((((((...(((((......)))))...-----------..))))))..(((((((((......................))))))))).... ( -22.35)
>DroSec_CAF1 111558 91 + 1
AAUCUUAACGGUGCAUUGAUAUCAGUCCACGUGUAGU-----------AUUGCACUUCGUUAAGCCAUUUCAUCAGUCUGUAAUUCCAUUGGCUUGACGUUC
..........(((.((((....)))).)))(((((..-----------..)))))..((((((((((......................))))))))))... ( -22.15)
>DroSim_CAF1 97845 91 + 1
AAUCUUAACGGUGCAUUGAUAUGAAUUCAGGUGUAGU-----------AUUGCACUUCGUUAAGCCAUUUCAUCAGUCUAUAAUUCCAUUGGCUUGGCAUUC
.........((((((...((((........))))...-----------..))))))..(((((((((......................))))))))).... ( -18.95)
>DroYak_CAF1 113205 102 + 1
ACACUCAUGGGUGCAUUGAUAUCAAUCCAGGUCUAGUACCUACACCCCAUUGCACUUCAUUGAGCCAUUUUAUCGAUCCGUAAUUCCAUUGGCUUGCCAUAU
......((((((((((((....)))...((((.....)))).........)))))......((((((..((((......))))......)))))).)))).. ( -19.60)
>consensus
AAUCUUAACGGUGCAUUGAUAUCAAUCCAGGUGUAGU___________AUUGCACUUCGUUAAGCCAUUUCAUCAGUCUGUAAUUCCAUUGGCUUGACAUUC
.........((((((...................................))))))..(((((((((......................))))))))).... (-15.09 = -15.28 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:01 2006