Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,231,010 – 5,231,105 |
Length | 95 |
Max. P | 0.709984 |
Location | 5,231,010 – 5,231,105 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 92.11 |
Mean single sequence MFE | -28.45 |
Consensus MFE | -22.33 |
Energy contribution | -23.45 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.07 |
Mean z-score | -1.89 |
Structure conservation index | 0.78 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.709984 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5231010 95 + 20766785 AAGGUUGUCCUUCGUGGCAUCCAGUUCUUUGUUCUGGAAAAGGAAACAGUUGCGAAGGGUACAAUUAUUGUUUGUGUGGGUUGAGAACGGAAAAC ..((((((((((((..((.(((((.........)))))...(....).))..))))))..))))))....(((.(((.........))).))).. ( -27.70) >DroSec_CAF1 106878 95 + 1 CAGGUUGUCCUUCGUGGCAUCCAGUUCUUUGUUCUGCAAAGGGAAACAGUUGCGAAGGGUACAAUUAUUGUUUGUGUGGGUUGAGAACGGAGAAC ..((.((((......)))).)).((((((((((((((((..(....)..))))......(((((.......))))).......)))))))))))) ( -30.10) >DroSim_CAF1 92966 95 + 1 AAGGUUGUCCUUCGUGGCAUCCAGUUCUUUGUUCUGCAAAGGGAAACAGUUGCGAAGGGUACAAUUAUUGUUUGUGUGGGUUGAGAACGGAGAAC ..((.((((......)))).)).((((((((((((((((..(....)..))))......(((((.......))))).......)))))))))))) ( -30.10) >DroYak_CAF1 108087 93 + 1 CAGGUUGUCCUUUGUAGCAUCCAGUUCUUUGUUCUGCAA-AGGAAACAGAUGCGAAGGGUACAGUAAUUCUUUG-GUGGCUUGAGAACGGGAAAC (((((..((.......(((((...(((((((.....)))-))))....)))))(((((((......))))))))-)..)))))............ ( -25.90) >consensus AAGGUUGUCCUUCGUGGCAUCCAGUUCUUUGUUCUGCAAAAGGAAACAGUUGCGAAGGGUACAAUUAUUGUUUGUGUGGGUUGAGAACGGAAAAC ..((.((((......)))).)).((((((((((((((((..(....)..))))......(((((.......))))).......)))))))))))) (-22.33 = -23.45 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:57 2006