| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,229,090 – 5,229,206 |
| Length | 116 |
| Max. P | 0.753742 |
| Location | 5,229,090 – 5,229,206 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 74.45 |
| Mean single sequence MFE | -39.18 |
| Consensus MFE | -13.64 |
| Energy contribution | -15.42 |
| Covariance contribution | 1.78 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.35 |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.753742 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5229090 116 - 20766785 CAACUGCUCCAGCAUCUGUUGCUCCUUCUGGCAGUACUUCUAGUAAAACCUCGGAGAUCAGCCAGGAAGGCAAUAGGUGGACCAGCAAAACCACUUCGAGCAGUAGCUGGAAUCGU ..(((((((......((((((((..(((((((....((((.((......)).))))....))))))).))))))))((((..........))))...)))))))............ ( -38.80) >DroPse_CAF1 108515 104 - 1 ---CUACUCCAG---CUGGU------GCUGAGAGCAGUACAAGCCGCACCUCCGAGACUAGCCAGGAGGGUAACAAGUGGACCAGUCGCGCGACCAGCAGUAGCAGCUGGAACCGG ---....(((((---(((.(------((((...((.......))(((.(((((...........))))).......((((.....))))))).....))))).))))))))..... ( -38.40) >DroSec_CAF1 104950 116 - 1 CUGCUGCUCCAACAUCUGUUGCACCUUCUGGAAGUACUUCUAGUAAAACCACGGAGAUCAGCCAGGAAGGCAAUAGGUGGACAAGCAAAACCACAUCGAGCAGCAGCUGGAAUCGU (((((((((......(((((((.(.((((((.....((((............)))).....)))))).))))))))((((..........))))...))))))))).......... ( -39.70) >DroSim_CAF1 91028 115 - 1 -UACUGCUCCAGCAUCUGUUGCACCUUCUGGAAGUACUUCUAGUAAAACCUCCGAGAUCAGCCAGGAAGGCAAUAGGUGGACAAGCAAAACCACAUCGAGCAGCAGUUGGAAUCGU -..((((((......(((((((.(.((((((.....(((..((......))..))).....)))))).))))))))((((..........))))...))))))............. ( -31.60) >DroEre_CAF1 105756 116 - 1 CUGCUGCUCCACCACCGCCUGCUCCUUCUGGCAGUACUUCAAGUAAAACCUCGGAGACUAGCCAGGAUGGCAAUAGGUGGACCAGCAAAACCACUUCCAGCAGCAGCUGGAACCGA .(((((.((((((...(((......((((((((((.((((.((......)).))))))).))))))).)))....)))))).))))).......(((((((....))))))).... ( -48.20) >DroPer_CAF1 111095 104 - 1 ---CUACUCCAG---CUGGU------GCUGAGAGCAGUACAAGCCGCACCUCCGAGACUAGCCAGGAGGGAAACAAGUGGACCAGUCGCGCGACCAGCAGUAGCAGCUGGAACCGG ---....(((((---(((.(------((((...((.......))(((.(((((...........))))).......((((.....))))))).....))))).))))))))..... ( -38.40) >consensus _U_CUGCUCCAGCAUCUGUUGC_CCUUCUGGAAGUACUUCAAGUAAAACCUCCGAGACCAGCCAGGAAGGCAAUAGGUGGACCAGCAAAACCACAUCCAGCAGCAGCUGGAACCGU .......(((((...(((((((......................................(((.....))).....((((..........)))).....))))))))))))..... (-13.64 = -15.42 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:56 2006