Locus 1351

Sequence ID 2R_DroMel_CAF1
Location 5,225,015 – 5,225,132
Length 117
Max. P 0.680960
window2334

overview

Window 4

Location 5,225,015 – 5,225,132
Length 117
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 90.88
Mean single sequence MFE -39.32
Consensus MFE -37.89
Energy contribution -37.37
Covariance contribution -0.52
Combinations/Pair 1.23
Mean z-score -0.99
Structure conservation index 0.96
SVM decision value 0.31
SVM RNA-class probability 0.680960
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5225015 117 + 20766785
ACGCAAAAAUGGGGCUUUGACUUCCGCGCCGGCUGCCCUUUAGCUGAAAAAUCACCCUACAUUUGGGAGCGCGUCAGCUUCCAGGAGUCGAGCUUCGCCCCAGAGAUGUACACCCUA
..(((....((((((((((((((((((((((((((.....))))))........(((.......))).)))))..........)))))))))....))))))....)))........ ( -40.00)
>DroSec_CAF1 101002 117 + 1
ACGCAAAAAUGGGGCUUUGACUUCCGCGCCGGUUGCCCUUUAGCCGAAAAAUCACCCUACAUUUGGGAGCGCGUCAGCUUCCAGGAGUCGAGCUUCGCCCCAGAGAUGUACACCCUA
..(((....((((((((((((((((((((((((((.....))))))........(((.......))).)))))..........)))))))))....))))))....)))........ ( -39.80)
>DroSim_CAF1 86913 117 + 1
ACGCAAAAAUGGGGCUUUGACUUCCGCGCCGGUUGCCCUUUAGCCGAAAAAUCACCCUACAUUUGGGAGCGCGUCAGCUUCCAGGAGUCGAGCUUCGCCCCAGAGAUGUACACCCUA
..(((....((((((((((((((((((((((((((.....))))))........(((.......))).)))))..........)))))))))....))))))....)))........ ( -39.80)
>DroEre_CAF1 101615 117 + 1
ACGCAAAAAUGGGGCUUCGACUUCCGCGCCGGCUGCCCUUUGGCCGAAAAAUCGCCCUUCAUCUGGGAGCGCGUUAGCUUCCAGGAGUCCAGCUUCGCCCCAGAGAUGUACACCCUU
..(((....((((((...(.((..((((((((((.......)))))........(((.......))).)))))..))).....((((.....))))))))))....)))........ ( -40.80)
>DroYak_CAF1 99836 117 + 1
ACGCAAAAAUGGGGCUUUGACUUCCGCGCCGGCUGCCCAUUGGCUGAAAAAUCGCACUUCAUCUGGGAGCGCGUCAGCUUCCAAGAGUCCAGCUUCGCCCCAGAGAUGUACACACUA
..(((....((((((...(((((..(((.(((((.......)))))......)))........(((((((......))))))).))))).......))))))....)))........ ( -34.50)
>DroAna_CAF1 118848 117 + 1
ACGCAGAAGUGGGGAUUCGAUUUCCGUGCCGGCUGCCCCUUGGCCGAGAAGUCGCCCUUCGUCUGGGAGCGCGUCAGUUUCCAGGAGUCGAGCUUCGCCCCGGAAAUGUACACCCUU
.(((....)))(((.....(((((((.(((((((.......))))).(((((((.....(..((((((((......))))))))..).))).))))))..))))))).....))).. ( -41.00)
>consensus
ACGCAAAAAUGGGGCUUUGACUUCCGCGCCGGCUGCCCUUUAGCCGAAAAAUCACCCUACAUCUGGGAGCGCGUCAGCUUCCAGGAGUCGAGCUUCGCCCCAGAGAUGUACACCCUA
..(((....(((((((((((((((.....((((((.....)))))).................(((((((......))))))))))))))))....))))))....)))........ (-37.89 = -37.37 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:51 2006