Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,219,569 – 5,219,689 |
Length | 120 |
Max. P | 0.830492 |
Location | 5,219,569 – 5,219,689 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.06 |
Mean single sequence MFE | -45.58 |
Consensus MFE | -31.25 |
Energy contribution | -31.28 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.32 |
Mean z-score | -2.03 |
Structure conservation index | 0.69 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.830492 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5219569 120 + 20766785 UCGGUAUCCUUAAGCCACGAUGCCAAGAUCCUGGCCAGUGGCGGUGCAGACUGCAAAGUGCGAGUCUGGGAUGCCCUGUUGGGGAAACAGCUGAAGAAGCUUAGACAUACCAAAACAGUG ..(((((((....(((((...((((......))))..)))))....((((((((.....)).)))))))))))))((((((((....)((((.....))))........)))..)))).. ( -48.10) >DroSec_CAF1 95683 120 + 1 UCGGUAUCCUUAAGCCACGAUGCCAAGAUCCUGGCCAGUGGCGGUGCAGACUGCAAAGUGCGAGUCUGGGAUGCCCUGCUAGGGAAACAGCUGAAGAAGCUUAGGCAUACCAAAACAGUA ..(((((.(((((((..(...((.....(((((((.((.((((.(.((((((((.....)).)))))).).))))))))))))).....))....)..))))))).)))))......... ( -46.70) >DroSim_CAF1 81492 120 + 1 UCGGUAUCCUUAAGCCACGAUGCCAAGAUCCUGGCCAGUGGCGGUGCAGACUGCAAAGUGCGAGUCUGGGAUGCCCUGCUGGGGAAACAGCUGAAGAAGCUUAGGCAUACAAAAACAGUG ..(((((((....(((((...((((......))))..)))))....((((((((.....)).)))))))))))))..((((.(....)((((.....))))..............)))). ( -46.30) >DroEre_CAF1 96421 120 + 1 UCGGUGUCCUUGAGCCACGAUGCCAAGAUCCUGGCCAGUGGCGGUGCAGACUGCAAAGUUCGGGUCUGGGAUGCACUGCUGGGCAAACAGCUAAAGAAGCUAACGCACAGGAAUACAGUG ...((((.((((.(((((...((((......))))..)))))((((((..((...............))..))))))((((......)))).......((....)).)))).)))).... ( -40.06) >DroYak_CAF1 94388 120 + 1 UCGGUGUCCUUAAGCCACGACGCCAAGAUCCUGGCCAGUGGCGGGGCGGAUUGCAAAGUCCGUGUCUGGGAUGCCCUGCUGGGGAAACAGCUGAAGAAGCUUACGCAUAACAAGACAGUG ..((((((((...(((((...((((......))))..)))))((.(((((((....))))))).)).))))))))..((((.(....)((((.....))))..............)))). ( -47.50) >DroAna_CAF1 113544 120 + 1 AGCGUGACCUUGAAUGACGAGGCCACCAUGAUGGCCAGCGGCAGUGCAGAUCGGACGGCUCGCAUCUGGUGCGCCAUCACUGGCGAUGAGCUGGUGAAGUUUACGCUUCCGGAGGCAGUA .(.(((.(((((.....))))).))))......(((.(((((.((.(.....).)).)).))).(((((.(((.(.((((..((.....))..)))).)....)))..)))))))).... ( -44.80) >consensus UCGGUAUCCUUAAGCCACGAUGCCAAGAUCCUGGCCAGUGGCGGUGCAGACUGCAAAGUGCGAGUCUGGGAUGCCCUGCUGGGGAAACAGCUGAAGAAGCUUACGCAUACCAAAACAGUG ..(((((((....(((((...((((......))))..)))))....((((((((.....))).)))))))))))).............((((.....))))................... (-31.25 = -31.28 + 0.03)
Location | 5,219,569 – 5,219,689 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.06 |
Mean single sequence MFE | -39.89 |
Consensus MFE | -27.28 |
Energy contribution | -27.65 |
Covariance contribution | 0.37 |
Combinations/Pair | 1.33 |
Mean z-score | -1.48 |
Structure conservation index | 0.68 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.631258 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5219569 120 - 20766785 CACUGUUUUGGUAUGUCUAAGCUUCUUCAGCUGUUUCCCCAACAGGGCAUCCCAGACUCGCACUUUGCAGUCUGCACCGCCACUGGCCAGGAUCUUGGCAUCGUGGCUUAAGGAUACCGA ..(((((..((........((((.....))))....))..)))))((.((((((((((.((.....))))))))....(((((..(((((....)))))...)))))....)))).)).. ( -41.60) >DroSec_CAF1 95683 120 - 1 UACUGUUUUGGUAUGCCUAAGCUUCUUCAGCUGUUUCCCUAGCAGGGCAUCCCAGACUCGCACUUUGCAGUCUGCACCGCCACUGGCCAGGAUCUUGGCAUCGUGGCUUAAGGAUACCGA .......(((((((.((((((((.(..((((((((.....)))))(((....((((((.((.....))))))))....))).)))(((((....)))))...).))))).)))))))))) ( -43.50) >DroSim_CAF1 81492 120 - 1 CACUGUUUUUGUAUGCCUAAGCUUCUUCAGCUGUUUCCCCAGCAGGGCAUCCCAGACUCGCACUUUGCAGUCUGCACCGCCACUGGCCAGGAUCUUGGCAUCGUGGCUUAAGGAUACCGA ..(((((.......((...((((.....))))))......)))))((.((((((((((.((.....))))))))....(((((..(((((....)))))...)))))....)))).)).. ( -38.82) >DroEre_CAF1 96421 120 - 1 CACUGUAUUCCUGUGCGUUAGCUUCUUUAGCUGUUUGCCCAGCAGUGCAUCCCAGACCCGAACUUUGCAGUCUGCACCGCCACUGGCCAGGAUCUUGGCAUCGUGGCUCAAGGACACCGA ...((((((.(((.(((.(((((.....)))))..))).))).))))))((((((((............)))))....(((((..(((((....)))))...)))))....)))...... ( -38.70) >DroYak_CAF1 94388 120 - 1 CACUGUCUUGUUAUGCGUAAGCUUCUUCAGCUGUUUCCCCAGCAGGGCAUCCCAGACACGGACUUUGCAAUCCGCCCCGCCACUGGCCAGGAUCUUGGCGUCGUGGCUUAAGGACACCGA ...((((((.....((....)).......((((......)))).((((.((...))...(((........))))))).(((((..(((((....)))))...)))))...)))))).... ( -35.60) >DroAna_CAF1 113544 120 - 1 UACUGCCUCCGGAAGCGUAAACUUCACCAGCUCAUCGCCAGUGAUGGCGCACCAGAUGCGAGCCGUCCGAUCUGCACUGCCGCUGGCCAUCAUGGUGGCCUCGUCAUUCAAGGUCACGCU ..(((....))).(((((...........((((...((((....))))(((.....))))))).....(((((....((.((..((((((....)))))).)).))....)))))))))) ( -41.10) >consensus CACUGUUUUGGUAUGCCUAAGCUUCUUCAGCUGUUUCCCCAGCAGGGCAUCCCAGACUCGCACUUUGCAGUCUGCACCGCCACUGGCCAGGAUCUUGGCAUCGUGGCUUAAGGACACCGA .......(((((((.(.((((((.(..((((((((.....)))))(((....(((((............)))))....))).)))(((((....)))))...).)))))).).))))))) (-27.28 = -27.65 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:50 2006