Locus 1348

Sequence ID 2R_DroMel_CAF1
Location 5,208,084 – 5,208,188
Length 104
Max. P 0.509730
window2329

overview

Window 9

Location 5,208,084 – 5,208,188
Length 104
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 92.19
Mean single sequence MFE -32.62
Consensus MFE -29.78
Energy contribution -30.25
Covariance contribution 0.47
Combinations/Pair 1.07
Mean z-score -1.05
Structure conservation index 0.91
SVM decision value -0.05
SVM RNA-class probability 0.509730
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5208084 104 - 20766785
GCAGUUACCUGGGCAG--CAGACGCACUCACCUGUGGCCAACUGUCCACGCCCUCGUGCAACUGCAACAAUGCCGCCGCCGCGGGGCCAAAUCAAAAUUGCAGCCA-
((((((.....(((.(--(((..((((.....(((((.(....).))))).....))))..)))).......((((....)))).))).......)))))).....- ( -34.70)
>DroSec_CAF1 84507 104 - 1
GCAGUUACCUGGGCAG--CAGACGCACUCACCUGUGGCCAACUGUCCACGCCCUCGUGCAACUGCAACAAUGCCGCCGCCGCGGGGCCAAAUCAAAAUUGCAGCCA-
((((((.....(((.(--(((..((((.....(((((.(....).))))).....))))..)))).......((((....)))).))).......)))))).....- ( -34.70)
>DroSim_CAF1 70074 104 - 1
GCAGUUACCUGGGCAG--CAGACGCACUCACCUGUGGCCAACUGUCCACGCCCUCGUGCAACUGCAACAAUGCCGCCGCCGCGGGGCCAAAUCAAAAUUGCAGCCA-
((((((.....(((.(--(((..((((.....(((((.(....).))))).....))))..)))).......((((....)))).))).......)))))).....- ( -34.70)
>DroEre_CAF1 86726 104 - 1
GCAGCUACCUGGACAG--CAGACGCACUCACCUGUGGCCAGCUGUCCACGCCCUCGUGCAACUGCAACAGUGCCACCGCCGCGGGGCCAAAUCAAAAUUGCAGCCA-
((((.....(((((((--(...((((......))))....)))))))).((((.(((((....(((....)))....).))))))))..........)))).....- ( -34.80)
>DroYak_CAF1 84379 104 - 1
GCAGCUACCUGGACAG--CAGACGCACUCACCUGUGGCCAACUGUCCACGCCCUCGUGCAACUGCAACAGUGCCACCGCCGCGGGGCCAAAUCAAAAUUGCAGCCA-
((((.....(((((((--..(.((((......))))..)..))))))).((((.(((((....(((....)))....).))))))))..........)))).....- ( -31.30)
>DroAna_CAF1 104768 105 - 1
GCAGUUACCUGGGCACCCCAAACGCACUCACCUGUGGCCGACUGUCUACGCCCUCGUAC--CAGCAACAAUGCCAUUGCAUCGGGGCCAAAUCAAAAUUGCAGCAGG
((((((...((((...))))..............((((((.(((..((((....)))).--))))..(.((((....)))).).)))))......))))))...... ( -25.50)
>consensus
GCAGUUACCUGGGCAG__CAGACGCACUCACCUGUGGCCAACUGUCCACGCCCUCGUGCAACUGCAACAAUGCCACCGCCGCGGGGCCAAAUCAAAAUUGCAGCCA_
((((((...(((((((......((((......)))).....))))))).((((.((((.....(((....)))......))))))))........))))))...... (-29.78 = -30.25 +   0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:46 2006