Locus 1347

Sequence ID 2R_DroMel_CAF1
Location 5,201,643 – 5,201,749
Length 106
Max. P 0.640533
window2328

overview

Window 8

Location 5,201,643 – 5,201,749
Length 106
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 77.33
Mean single sequence MFE -30.43
Consensus MFE -19.91
Energy contribution -19.39
Covariance contribution -0.52
Combinations/Pair 1.46
Mean z-score -1.29
Structure conservation index 0.65
SVM decision value 0.22
SVM RNA-class probability 0.640533
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5201643 106 + 20766785
AUCUGGUUAACAUAUUGAUCCUCCCAAUAAAGACGGGCCCACUCCACGCAGUGCGCGAAACUCUUGGGUUUGUCGUCGAUCAGAGCUUUCUGUAAAAAUA-AA--UUAC
.((((((..((.(((((.......)))))..((((((((((.....(((.....))).......))))))))))))..))))))................-..--.... ( -29.20)
>DroVir_CAF1 107465 109 + 1
AUUUGAUUGGCAUACUGAUCCUCCCAAUGUAGACGCGCCCAUUCCACGCAGUGGGCAAAGCUUUUCGGUUUGUCAUCGAUCAGGGCUUUCUACAAAUAGGAGAGGGAAC
....(((..(....)..)))((((...((((((...(((((((......))))))).((((((((((((.....)))))..)))))))))))))....))))....... ( -33.50)
>DroPse_CAF1 78524 108 + 1
AUCUGAUUCGCGUACUGGUCCUCCCAGUAGAGGCGGGCCCACUCCACGCAAUCCGCAAAGCUCUUGGGCUUGUCAUCAAUGAGGGCUUUCUGCAAACGAA-AAAGAGAU
.(((..((((.(((..(((((((...((.((((((((((((......((.....))........)))))))))).)).)))))))))...)))...))))-..)))... ( -32.94)
>DroYak_CAF1 77933 106 + 1
AUCUGGUUAACGUAUUGAUCCUCCCAAUAUAACCGGGCCCACUCUACGCAGUGCGCGAAGCUCUUGGGCUUGUCAUCGAUCAGGGCUUUCUGUAAAAUUU-AA--AGAC
..((((((...((((((.......))))))))))))((((......(((.....)))(((((....)))))...........))))..............-..--.... ( -26.50)
>DroMoj_CAF1 113395 102 + 1
AUUUGAUUGGCAUAUUGAUCUUCCCAGUGGAAGCGAGCCCAUUCCACGCAGUGUGCAAAGCUCUUUGGCUUGUCAUCAAUCAAGGCUUUCUAUAAAGAAU-------UC
.((((((((((((((((.........((((((.........)))))).)))))))).(((((....))))).....))))))))...((((....)))).-------.. ( -27.50)
>DroPer_CAF1 81266 108 + 1
AUCUGAUUCGCGUACUGGUCCUCCCAGUAGAGGCGGGCCCACUCCACGCAAUCCGCAAAGCUCUUGGGCUUGUCAUCAAUGAGGGCUUUCUGCAAACGAA-AAAGAGAU
.(((..((((.(((..(((((((...((.((((((((((((......((.....))........)))))))))).)).)))))))))...)))...))))-..)))... ( -32.94)
>consensus
AUCUGAUUAGCAUACUGAUCCUCCCAAUAGAGGCGGGCCCACUCCACGCAGUGCGCAAAGCUCUUGGGCUUGUCAUCAAUCAGGGCUUUCUGCAAAAAAA_AA__AGAC
.(((((((....(((((.......)))))..((((((((((......((.....))........))))))))))...)))))))......................... (-19.91 = -19.39 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:45 2006