Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,201,285 – 5,201,387 |
Length | 102 |
Max. P | 0.863882 |
Location | 5,201,285 – 5,201,387 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 74.73 |
Mean single sequence MFE | -29.49 |
Consensus MFE | -19.80 |
Energy contribution | -20.38 |
Covariance contribution | 0.58 |
Combinations/Pair | 1.33 |
Mean z-score | -1.40 |
Structure conservation index | 0.67 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.863882 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5201285 102 + 20766785 AUCGAAGUUAUUGGCCGAGGCGGCGGCUGCUGCCUCAUUGGUUUCUAUUUUCACGCCCGAACGGGGUUUAAACUCGGGCACCUAUAAAUCA--------AUA-AUAUCAG------A ...((.((((((((((((((((((....))))))))...)))............((((((.............))))))..........))--------)))-)).))..------. ( -33.92) >DroVir_CAF1 107097 109 + 1 AUCAAAGUUAUUGGCUGCCGCAGCGGCGGCUGCCUCAUUUGUCUCAAUCUUAACGCCAGAACGUGGCUUAAAUUCGGGCACCUACAACAGG-AAAUUG--UGUACAUGAG-----AU (((.........(((.(((((....))))).)))((((.(((((.(((.((((.((((.....))))))))))).)))))..((((.(((.-...)))--)))).)))))-----)) ( -30.10) >DroGri_CAF1 95099 105 + 1 AUCAUAAUUAUUGGCCGAGGCGGCGGCAGCGGCCUCAUUUGUCUCAAUCUUGACGCCAGAGCGUGGCCUAAAAUCGGGCACCUAAAAUGGA-AA------UGAAUAUAAA-----UA .((((.....(((((.(((((.((....)).)))))....(((........))))))))((.(((.((.......)).)))))........-.)------))).......-----.. ( -33.30) >DroEre_CAF1 78851 102 + 1 AUCAAAGUUAUUGGCCGAGGCGGCGGCUGCUGCCUCAUUGGUCUCAAUUUUUACGCCCGAACGAGGUUUAAACUCAGGCACCUAAAAAUAA--------AUA-AUAUUAG------A ......((((((((((((((((((....))))))))...))))...(((((((.(((.....(((.......))).)))...))))))).)--------)))-)).....------. ( -27.70) >DroWil_CAF1 109350 114 + 1 AUCGAAAUGAUUGGCCGAUGCGGCAGCAGCAGCCUCAUUAGUCUCAAUUUUGACACCGGAACGGGGCUUAAAUUCGGGUACCUAAAUUAAAA-AUGGGAAUAAUUAUAAGUAUUG-- .(((((((....(((..(((.(((.......))).)))..)))...))))))).(((.(((...........))).))).((((........-.)))).................-- ( -23.20) >DroYak_CAF1 77575 102 + 1 AUCAAAGUUAUUGGCCGAGGCGGCAGCUGCUGCCUCAUUGGUCUCGAUUUUCACGCCCGAACGGGGUUUAAACUCAGGCACCUAUACAAAA--------AUA-UUAUUAG------A ......((.....(((((((((((....)))))))).........(((((..((.(((....)))))..))).)).)))......))....--------...-.......------. ( -28.70) >consensus AUCAAAGUUAUUGGCCGAGGCGGCGGCUGCUGCCUCAUUGGUCUCAAUUUUCACGCCCGAACGGGGCUUAAACUCGGGCACCUAAAAAAAA________AUA_AUAUAAG______A .............(((((((((((....))))))))..................((((.....)))).........)))...................................... (-19.80 = -20.38 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:44 2006