Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,191,763 – 5,191,855 |
Length | 92 |
Max. P | 0.983148 |
Location | 5,191,763 – 5,191,855 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 75.04 |
Mean single sequence MFE | -23.35 |
Consensus MFE | -12.68 |
Energy contribution | -13.77 |
Covariance contribution | 1.09 |
Combinations/Pair | 1.36 |
Mean z-score | -2.40 |
Structure conservation index | 0.54 |
SVM decision value | 1.94 |
SVM RNA-class probability | 0.983148 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5191763 92 + 20766785 CCUUUCCCUCAGACAGAUAUAUCCACAUUUAUGUACAUAUAUGUAUAUGUAUGUACGCUACUGCAUGGCGACAUGCAAAUGUGUGUGGUUGU ............((((...((..(((((((..((((((((((....))))))))))......(((((....))))))))))))..)).)))) ( -28.30) >DroSec_CAF1 67273 88 + 1 CCUUUCCCUCAGACAGAUAUAUCCACAUUUAUGUAUACAUAUGUAUAU----GUACGCUACUGCGUGGCGACAUGCAAAUGUGUGUGGUUGU ..................(((.(((((..(((((((((....))))))----)))(((...((((((....))))))...)))))))).))) ( -24.30) >DroSim_CAF1 53638 88 + 1 CCUUUCCCUCAGACAGAUAUAUCCACAUUUAUGUAUGCAUAUGUAUAU----GUACGCUACUGCGUGGCGACAUGCAAAUGUGUGUGGUUGU ..................(((.(((((..(((((((((....))))))----)))(((...((((((....))))))...)))))))).))) ( -24.30) >DroEre_CAF1 69006 82 + 1 CCUUUCCCUCAGACAGAUAUAUCCACAUUUCUAU------GUGUGUAU----GUACGAUACUGCGUGGCAACAUGCAAAUGUGUGUGGUUGU ......((.((.(((.(((((..(((((....))------)))..)))----)).......((((((....))))))..))).)).)).... ( -26.00) >DroYak_CAF1 67699 74 + 1 CCUUUCCCUCAGACAGAUAUAUCCCCAUUUCUAU------------------AAACGCUACUGCGUGGCGACAUGCAAAUGUGUGUGGUUGU ......((.((.(((((.((......)).)))..------------------.........((((((....))))))...)).)).)).... ( -14.90) >DroAna_CAF1 89882 76 + 1 CC----------GUAUAUAUAUUCGAUUUCUUGCAUAUAUACAUAUAU----AGAGGGCUGUGCGUGGUGAUAUGCAAAUGU--GCGGUUGU ((----------((((((......(....)((((((((...((..(((----((....)))))..))...))))))))))))--)))).... ( -22.30) >consensus CCUUUCCCUCAGACAGAUAUAUCCACAUUUAUGUAUA_AUAUGUAUAU____GUACGCUACUGCGUGGCGACAUGCAAAUGUGUGUGGUUGU ..................(((.((((.....(((((......))))).......((((...((((((....))))))...)))))))).))) (-12.68 = -13.77 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:43 2006