| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,180,729 – 5,180,825 |
| Length | 96 |
| Max. P | 0.994505 |
| Location | 5,180,729 – 5,180,825 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 72.00 |
| Mean single sequence MFE | -22.78 |
| Consensus MFE | -8.71 |
| Energy contribution | -9.35 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.80 |
| Structure conservation index | 0.38 |
| SVM decision value | 2.49 |
| SVM RNA-class probability | 0.994505 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5180729 96 - 20766785 UGCCAAUGCCAAUACCAAUACC--AAUCUGGCCAGAACUUUUGGCCAACGAUUCUUUGCAUGAAAUUUGCAAAUCGUUUGGCC-AUUCAAAAGUUGGUA (((((((((((...........--....))))..(((....((((((((((((...((((.......))))))))).))))))-))))....))))))) ( -29.26) >DroPse_CAF1 58066 95 - 1 ---CCAUUCAUAUUCCUGAGCUCUUCUCUGCCCGGAA-UAUUGGCUAACGAUUCUUUUCAUGAAAUUUGCAAAUCGUUUGGUCGAUUCAAAAGUUUGCU ---(((...(((((((.(.((........))).))))-)))))).....((......)).........((((((..(((((.....))))).)))))). ( -18.40) >DroSec_CAF1 56275 84 - 1 UGCCAAUGCCAAUACCAAUACC--AAUCUGGCCAGAACUUUUGGCUAACGAUUCUUUGCAUGAAAUUUGCAAAU-------------CAAAAUUUGCUA .......((.(((.........--((((((((((((...))))))))..)))).((((((.......)))))).-------------....))).)).. ( -14.80) >DroEre_CAF1 58169 73 - 1 UAC------------------------CUGGCUGGAACUUUUGGCUAACGAUUCUUUGCAUGAAAU-UGCAAAUCGUUUGGCC-AUUCAAAAGUUGCUA ...------------------------.((((...((((((((((((((((((...((((......-))))))))).))))))-)....)))))))))) ( -21.90) >DroYak_CAF1 56307 90 - 1 UAC------CAAUACCAAUGCC--AAUCUGGCCAGAACUUUUGGCUAACGAUUCUUUGCAUGAAAUUUGCAAAUCGUUUGGCC-AUUCAAAAGUUGGUA ...------...((((((((((--.....)))..(((....((((((((((((...((((.......))))))))).))))))-))))....))))))) ( -27.80) >DroPer_CAF1 59241 95 - 1 ---CCAUUCAUAUUCCUGGGCUCUUCUCUGCCCGGAA-UAUUGGCUAACGAUUCUUUUCAUGAAAUUUGCAAAUCGUUUGGUCGAUUCAAAAGUUUGCU ---(((...(((((((.((((........))))))))-)))))).....((......)).........((((((..(((((.....))))).)))))). ( -24.50) >consensus U_CC_AU_CCAAUACCAAUGCC__AAUCUGGCCAGAACUUUUGGCUAACGAUUCUUUGCAUGAAAUUUGCAAAUCGUUUGGCC_AUUCAAAAGUUGGUA ............................(((((((.....)))))))((((((...((((.......))))))))))...................... ( -8.71 = -9.35 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:42 2006