| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,180,536 – 5,180,632 |
| Length | 96 |
| Max. P | 0.952901 |
| Location | 5,180,536 – 5,180,632 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 78.80 |
| Mean single sequence MFE | -14.24 |
| Consensus MFE | -11.70 |
| Energy contribution | -11.70 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.82 |
| SVM decision value | 1.43 |
| SVM RNA-class probability | 0.952901 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5180536 96 + 20766785 CCAGCAAAUUACGUGACCUGCAAAUUUAAUUUUCUCUUUCAUUUUC--CACACAUACGAGAAAAUUGUCACACUCGCA-----CCACGAUUUUCACGCUUUCC ..(((.......(((((..........(((((((((..........--.........))))))))))))))..(((..-----...))).......))).... ( -14.61) >DroVir_CAF1 78011 93 + 1 CCAGCAAAUUACGUGACCUGCAAAUUAAAUUUUCUCUUUCAUUUC----GGAUAUAUGAGAAAAUUGUCACACAC------UGCCACGCCUCCCACAGAGACC ...(((......(((((..........(((((((((.(((.....----))).....))))))))))))))....------))).....(((.....)))... ( -14.10) >DroSim_CAF1 42729 98 + 1 CCAGCAAAUUACGUGACCUGCAAAUUUAAUUUUCUCUUUCAUUUUCCCCACACAUAUGAGAAAAUUGUCACACUCGCA-----CCACGAUUUCCACGCUUUCC ..(((.......(((((..........(((((((((.....................))))))))))))))..(((..-----...))).......))).... ( -15.10) >DroEre_CAF1 58010 88 + 1 CCAGCAAAUUACGUGACCUGAAAAUUUAAUUUUCUCUUUCGUUUUCCC----CACAUGAGAAAAUUGUCACACUCGCA-----CCACGCUUUCCAU------C ............(((((..........(((((((((............----.....))))))))))))))....((.-----....)).......------. ( -12.83) >DroYak_CAF1 56140 86 + 1 CCAGCAAAUUACGUGACCUGCAAAUUUAAUUUUCUCUUUCAUUUUCCC---ACAUAUGAGAAAAUUGUCACACUCGCA-----CCACGUUUUCC--------- ..........(((((...(((.....((((((((((............---......))))))))))........)))-----.))))).....--------- ( -13.99) >DroMoj_CAF1 81008 88 + 1 CCAGCAACUUACGUGACCUGCAAAUUAAAUUUUCUCUUUCAUUUC----GGAUAUAUGAGAAAAUUGUCACACACACUCUCUGGCACGCCUC----------- ((((........(((((..........(((((((((.(((.....----))).....)))))))))))))).........))))........----------- ( -14.83) >consensus CCAGCAAAUUACGUGACCUGCAAAUUUAAUUUUCUCUUUCAUUUUC_____ACAUAUGAGAAAAUUGUCACACUCGCA_____CCACGCUUUCCAC______C ............(((((..........(((((((((.....................))))))))))))))................................ (-11.70 = -11.70 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:41 2006