Locus 1342

Sequence ID 2R_DroMel_CAF1
Location 5,177,555 – 5,177,659
Length 104
Max. P 0.651919
window2323

overview

Window 3

Location 5,177,555 – 5,177,659
Length 104
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 94.11
Mean single sequence MFE -25.55
Consensus MFE -22.61
Energy contribution -22.53
Covariance contribution -0.08
Combinations/Pair 1.09
Mean z-score -1.31
Structure conservation index 0.89
SVM decision value 0.25
SVM RNA-class probability 0.651919
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5177555 104 - 20766785
AUUGUGUGAUUGUGUGCUGGCAAGUGUUUUUCCAUUUCCGCUCAGCAUGGAAAUUGUGGGACGGAAGUCGUUCUUAGCAGUUUUGUACUCAUUUUGUUUUCACC
.....((((....(((((((((((((......)))))..)).)))))).((((((((((((((.....))))))..))))))))...............)))). ( -26.50)
>DroSec_CAF1 53073 104 - 1
AUUGUGUGAUUGUGUGCUGGCAAGUGUUUUUCCAUUUCCGCUCAGCAUGGAAAUUGUGGGACGGAAGUCGUUCUUAGCAGUUUUGUACUCAUUUUGUUUUCACC
.....((((....(((((((((((((......)))))..)).)))))).((((((((((((((.....))))))..))))))))...............)))). ( -26.50)
>DroSim_CAF1 39732 96 - 1
AUU--------GUGUGCUGGCAAGUGUUUUUCCAUUUCCGCUCAGCAUGGAAAUUGUGGGACGGAAGUCGUUCUUAGCAGUUUUGUACUCAUUUUGUUUUCACC
...--------..(((((((((((((......)))))..)).))))))((((((.(((((((((((.(.((.....))).)))))).)))))...))))))... ( -24.90)
>DroEre_CAF1 55072 96 - 1
AUU--------GUGUGCUGGCAAGUGUUUUUCCAUUUCCGCUCAGCAUGGAAAUUGUGGGACGGAAGUCGUUCUUAGCAGUUUUGUACUCAUUUUGUUUUCACC
...--------..(((((((((((((......)))))..)).))))))((((((.(((((((((((.(.((.....))).)))))).)))))...))))))... ( -24.90)
>DroYak_CAF1 53213 96 - 1
AUU--------GUGUGCUGGCAAGUGUUUUUCCAUUUCCGCUCAGCAUGGAAAUUGUGGGACGGAAGUCGUUCUUAGCAGUUUUGUACUCAUUUUGUUUUCACC
...--------..(((((((((((((......)))))..)).))))))((((((.(((((((((((.(.((.....))).)))))).)))))...))))))... ( -24.90)
>DroAna_CAF1 75729 96 - 1
AUU--------GUGUGUUUGCAAGUGUUUUUCCAUUUCCGCUCAGCAUGGAAAUUGCGGGGCGGAAGUCGUUCUUAGCAGUUUUGUACUCAUUUUGUUUUUACC
...--------..(((..((((((((((...(.((((((((((.(((.......))).)))))))))).).....))))..))))))..)))............ ( -25.60)
>consensus
AUU________GUGUGCUGGCAAGUGUUUUUCCAUUUCCGCUCAGCAUGGAAAUUGUGGGACGGAAGUCGUUCUUAGCAGUUUUGUACUCAUUUUGUUUUCACC
.............(((((((((((((......)))))..)).))))))((((((.(((((((((((.(.((.....))).)))))).)))))...))))))... (-22.61 = -22.53 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:40 2006