Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,393,520 – 1,393,632 |
Length | 112 |
Max. P | 0.939339 |
Location | 1,393,520 – 1,393,632 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.75 |
Mean single sequence MFE | -24.64 |
Consensus MFE | -22.20 |
Energy contribution | -22.80 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.06 |
Mean z-score | -1.50 |
Structure conservation index | 0.90 |
SVM decision value | 1.28 |
SVM RNA-class probability | 0.939339 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1393520 112 + 20766785 CCUCUAAACGAAUCUUCAAUUACAAAAUUGAUUACCAU--------UGAAAAUUGAGAAUUAAGUACAGUUUUGAGUUUUCAGCAUAAUUGCAGCUGAUUUCUGUUGAGGGGCGAUCAAA (((((.((((((((.((((((....)))))).......--------((((((((.((((((......)))))).))))))))(((....)))....)))))..))).)))))........ ( -24.70) >DroSec_CAF1 20020 112 + 1 CCUCUAAACGAAUCUUCAAUUACAAAAUUGAUUACCAU--------UGAAAAUUGAGAAUUAAGCACAGUUUUGAGUUUUCAGCAUAAUUGCAGCUGAUUCCUGUCGAGGGGCGAUCAAA (((((..(((((((.((((((....)))))).......--------((((((((.((((((......)))))).))))))))(((....)))....)))))..))..)))))........ ( -25.80) >DroSim_CAF1 25152 112 + 1 CCUCUAAACGAAUCUUCAAUUACAAAAUUGAUUACCAU--------UGAAAAUUGAGAAUUAAGUACAGUUUUGAGUUUUCAGCAUAAUUGCAGCUGAUUCCUGUCGAGGGGCGAUCAAA (((((..(((((((.((((((....)))))).......--------((((((((.((((((......)))))).))))))))(((....)))....)))))..))..)))))........ ( -25.80) >DroEre_CAF1 19037 120 + 1 CCUCUAAACGAAUCUUCAAUUACAAAAUUGAUUACCAUUGAACCAUUGAAAAUUGAGAAUUAAGUACAGUUUUGAGUUUUCAGCAUAAUUGCAGCUGAUUUCUGUUGAGGGGCGAUCGAA (((((.((((((((.((((((....))))))...............((((((((.((((((......)))))).))))))))(((....)))....)))))..))).)))))........ ( -24.70) >DroYak_CAF1 20590 112 + 1 CCUCUAAACGAAUUUUCAAUUACAAAAUUGAUUACCAU--------UGAAAAUUGAGAAUUAAGUACAGUUAUGAGUUUUCAGCAUAAUUGCAGCUGAUUUCGGUUGAUUGGCGAUCAAA ...........................(((((..((((--------((((((((.(.((((......)))).).)))))))))........((((((....))))))..)))..))))). ( -22.20) >consensus CCUCUAAACGAAUCUUCAAUUACAAAAUUGAUUACCAU________UGAAAAUUGAGAAUUAAGUACAGUUUUGAGUUUUCAGCAUAAUUGCAGCUGAUUUCUGUUGAGGGGCGAUCAAA (((((.((((((((.((((((....))))))...............((((((((.((((((......)))))).))))))))(((....)))....)))))..))).)))))........ (-22.20 = -22.80 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:28:51 2006