Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,160,004 – 5,160,102 |
Length | 98 |
Max. P | 0.897928 |
Location | 5,160,004 – 5,160,102 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 76.25 |
Mean single sequence MFE | -23.50 |
Consensus MFE | -15.68 |
Energy contribution | -15.24 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.23 |
Mean z-score | -1.80 |
Structure conservation index | 0.67 |
SVM decision value | 1.00 |
SVM RNA-class probability | 0.897928 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5160004 98 + 20766785 UCUGCCCAGUCGGCAGACUGACCGCCCCCUGCGCCGCCCCCUGCGCCGCCCCAUUCAG--GUCCCCAUUCCU----CGGGGGGGAUAAUUUUUCAUUUUCAUCC ((((((.....))))))....((.(((((.(((.(((.....))).))).......((--(........)))----.))))))).................... ( -31.50) >DroSec_CAF1 35735 88 + 1 UCUGCCCAGUCGGCAGACUGACCGCCCCCUGCCCC----------CCGCCCCAUUCAA--GUUCCCAUUCCU----CGGGGGGGAUAAUUUUUCAUUUUCAUCC ((((((.....))))))..............((((----------(((..........--............----)))))))..................... ( -22.15) >DroSim_CAF1 21885 88 + 1 UCUGCCCAGUCGGCAGACUGACCGCCCCCUGCCCC----------CCACCCCAUUCAA--AUCCCCAUUCCU----CGGGGGGGAUAAUUUUUCAUUUUCAUCC ((((((.....))))))..............((((----------((...........--............----.))))))..................... ( -20.66) >DroYak_CAF1 35909 79 + 1 UCUGCACAGUCGGCAGACUGAACACCU-CGGCCCC----------CC--------AAA--GUUCCCAUUCCU----CGGGGGGGAUAAUUUUUCAUUUUCAUCC (((((.......)))))((((.....)-)))((((----------((--------..(--(.........))----..)))))).................... ( -21.10) >DroAna_CAF1 57504 93 + 1 GCUGACCAGUCGGCUGACUGACUGCCAUCAUAUUU----------CCAC-UCAUCCAACCAUCCUCCUGCGCCAGAUGGGGGGGAUAAUUUUUCAUUUUCAUCC ..(((.(((((((....)))))))...)))(((..----------((.(-(((((...(((......)).)...))))))))..)))................. ( -22.10) >consensus UCUGCCCAGUCGGCAGACUGACCGCCCCCUGCCCC__________CCACCCCAUUCAA__GUCCCCAUUCCU____CGGGGGGGAUAAUUUUUCAUUUUCAUCC ......(((((....)))))........................................((((((...((......)).)))))).................. (-15.68 = -15.24 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:33 2006