| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,157,677 – 5,157,775 |
| Length | 98 |
| Max. P | 0.938037 |
| Location | 5,157,677 – 5,157,775 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 72.21 |
| Mean single sequence MFE | -19.21 |
| Consensus MFE | -0.90 |
| Energy contribution | -1.70 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.05 |
| SVM decision value | 1.29 |
| SVM RNA-class probability | 0.938037 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5157677 98 - 20766785 UUAUAAAUGGUUU-UAUCAAUCGAUUACGAUUCACCCGUAAUUAGAUGAAUAUGUCGCAGUUCUUCGAUUGUUUUUCACAAAACU------AUUUAAUCUCCAGU ...((((((((((-(..((((((((((((.......))))))).((.((((........)))).)))))))........))))))------)))))......... ( -19.30) >DroSec_CAF1 33485 96 - 1 UACUAAAUGGGUU-UAUCAAUCGAUUACGAUUCU--CAUAAUUAGUUGAAUUUGUCGCAGUUCUUCGAUUGCUAUUCACAAAACU------AUUUAAUCUCCAGG ...(((((((...-..(((((..((((.(.....--).))))..))))).(((((.((((((....)))))).....))))).))------)))))......... ( -16.80) >DroSim_CAF1 19618 98 - 1 UAGUAAAUGGUUU-UAUCAAUCGAUUACGAUUCCCCCGUAAUUAGUUGAAUUUGUCGCAGUUCUUCGAUUGCUUUUCACAAAACC------AUUUAAUCUCCAGC ...((((((((((-(.(((((..((((((.......))))))..))))).......((((((....)))))).......))))))------)))))......... ( -27.10) >DroEre_CAF1 35394 93 - 1 ---CAAAUGGCAUUUAUGAACCAACUAGAAUUC--CCAUAAUUAGUUGAAUAUGUUAGAGUU-------CGCUUUUCACAGAACUACGCGUAUUUAAUCUGCCAC ---....(((((.(((((...............--.)))))...(((((((((((...((((-------(..........)))))..))))))))))).))))). ( -20.79) >DroYak_CAF1 33745 81 - 1 UAGCAAAUGGUUU-UA---------------UC--CCAUAAUUAGUUGAACAUGUCGGAGUUGUUCGAUAGCUUUUCACAAAACU------AUUUAAUCUCUUUC ....(((((((((-(.---------------..--.........((((((((.........))))))))..........))))))------)))).......... ( -12.05) >consensus UAGUAAAUGGUUU_UAUCAAUCGAUUACGAUUC__CCAUAAUUAGUUGAAUAUGUCGCAGUUCUUCGAUUGCUUUUCACAAAACU______AUUUAAUCUCCAGC ............................................(.((((...((((........)))).....))))).......................... ( -0.90 = -1.70 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:32 2006