Locus 1336

Sequence ID 2R_DroMel_CAF1
Location 5,156,385 – 5,156,480
Length 95
Max. P 0.632830
window2314

overview

Window 4

Location 5,156,385 – 5,156,480
Length 95
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 76.83
Mean single sequence MFE -15.75
Consensus MFE -2.42
Energy contribution -3.02
Covariance contribution 0.60
Combinations/Pair 1.29
Mean z-score -1.61
Structure conservation index 0.15
SVM decision value 0.20
SVM RNA-class probability 0.632830
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5156385 95 - 20766785
CAAAGAUAUUGAGUUUUUCGGUAUUUGUGAUGACACAAGUCU--AUCCU------UUAUCUAUAA-UAACUAUUAUCACUUGUACUUAAAUCUCAUUUUGUCAA
....((((.((((..(((.(((((..((((((((....))).--.....------((((.....)-))).....)))))..))))).))).))))...)))).. ( -18.80)
>DroSec_CAF1 32155 101 - 1
CAAAGAUAUUGAGUUUUUCAGUACUUGUGAUGACGCAAGUCU--AUGCUUUAUCUUUAUCUAUAA-UAACUAUUAUCACUUUUACUUAAAUCUUAUUUUGUCAA
....((((.((((..(((.((((...((((((((....))).--...........((((.....)-))).....)))))...)))).))).))))...)))).. ( -17.20)
>DroSim_CAF1 18255 101 - 1
CAAAGAUAUGGAGGUUUUCGAUACUUUUGAUGAUGCAAGUCU--AUCCCUUAUCUUUAUCUAUUA-UAACUAUUAUCACUUUUACUUAAAUCUCAUUUUGUCAA
....((((..(((((((..........((((((((.......--.....................-....)))))))).........)))))))....)))).. ( -12.06)
>DroEre_CAF1 34021 97 - 1
CAAGGAUAUUGGCUUU-UC-----CUUCAAUGACACAAGCCUUAAAAGCCUAUCCUUAUAUUUUGGGCAAUAUAAUC-CUUUUACUUAAAUUUCAUUUUGUCAA
.((((((...(((((.-((-----.......))...)))))......(((((...........)))))......)))-)))....................... ( -15.90)
>DroYak_CAF1 32338 102 - 1
CAAGGAUAUUGAGUUU-UCGGUAUUUUUGAUGCCACAAGCCUUAAAAGUCUAUCUUUAUCUAUUA-GUACUAUAAUCACUUUUACUAAAGCCUCAUUUUGUCAA
....((((.((((.((-(..(((....((((((.....))......((((((...........))-).)))...))))....)))..))).))))...)))).. ( -14.80)
>consensus
CAAAGAUAUUGAGUUUUUCGGUACUUUUGAUGACACAAGUCU__AUACUCUAUCUUUAUCUAUUA_UAACUAUUAUCACUUUUACUUAAAUCUCAUUUUGUCAA
....((((.((((....(((.......))).(((....)))..................................................))))...)))).. ( -2.42 =  -3.02 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:31 2006