| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,154,560 – 5,154,650 |
| Length | 90 |
| Max. P | 0.996876 |
| Location | 5,154,560 – 5,154,650 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 91.46 |
| Mean single sequence MFE | -40.18 |
| Consensus MFE | -35.13 |
| Energy contribution | -35.88 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.08 |
| Mean z-score | -3.08 |
| Structure conservation index | 0.87 |
| SVM decision value | 2.76 |
| SVM RNA-class probability | 0.996876 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5154560 90 - 20766785 ACGUGGCGAGCUGCGACGCCAGCUGGCUG----CUUCACUUGGUCUCCCAGCUCACGUAGGCGAUAAUGUUUGCCUGCCAAGUGAGUUGGGUAC ..(..((.(((((......))))).))..----)............((((((((((((((((((......))))))))...))))))))))... ( -44.10) >DroSec_CAF1 30380 90 - 1 ACGUGGCGAGCUGCGACGCCAGCUGGCUG----UUUCACUUGGGCUUCCAGCUCACGUAGGCGAUAAUGUUUGCCUGCCAAGUGAGUUGGGUUC ..(..((.(((((......))))).))..----)............((((((((((((((((((......))))))))...))))))))))... ( -39.00) >DroSim_CAF1 16482 90 - 1 ACGUGGCGAGCUGCGACGCCAGCUGGCUG----CUUCACUUGGGCUCCCAGCUCACGUAGGCGAUAAUGUUUGCCUGCCAAGUGAGUUGGGUUC ..(..((.(((((......))))).))..----)............((((((((((((((((((......))))))))...))))))))))... ( -44.10) >DroEre_CAF1 32219 90 - 1 ACGUGGCAAGCUGCGACGCCAGCUGGCUG----CUUCACUUGGGCUUCCAGCUCACGUAGGCGAUAAUGUUUGCCUGCCAAGUGAGUUGGUUUC ..(..((.(((((......))))).))..----).............(((((((((((((((((......))))))))...))))))))).... ( -38.70) >DroYak_CAF1 30459 90 - 1 ACGUGGCGAGCUGCGACGCCAGCUGGCUG----CUUCACUUGGGCUUCCAGCUCACGUAGGCGAUAAUGUUUGCCUGCCAAGUGAGUUGGGUUC ..(..((.(((((......))))).))..----)............((((((((((((((((((......))))))))...))))))))))... ( -41.90) >DroAna_CAF1 52377 94 - 1 ACGUGGCGAACUUCGACUCCAGCUGGCUGGCUUUCUCACUUAUGCUAACAGCUCACGUAGGCGAUAAUGUUUGCCUGCCAAGUGAGCCGGGCAU ..((((((.....))...((((....)))).....))))..(((((....((((((((((((((......))))))))...))))))..))))) ( -33.30) >consensus ACGUGGCGAGCUGCGACGCCAGCUGGCUG____CUUCACUUGGGCUUCCAGCUCACGUAGGCGAUAAUGUUUGCCUGCCAAGUGAGUUGGGUUC ....(((.(((((......))))).)))..................((((((((((((((((((......))))))))...))))))))))... (-35.13 = -35.88 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:30 2006