Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,151,699 – 5,151,797 |
Length | 98 |
Max. P | 0.843757 |
Location | 5,151,699 – 5,151,797 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 72.26 |
Mean single sequence MFE | -21.08 |
Consensus MFE | -10.99 |
Energy contribution | -11.43 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.16 |
Mean z-score | -1.76 |
Structure conservation index | 0.52 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.843757 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5151699 98 + 20766785 GUCGUUCCCUAAUUAGUUAUCUAAAGUUAGUUGGCGACACUAAUGGCAGUGGCACUACAGCUACAACAACAGCAACACAACUACGACAGCAUUAGAC-U- ((((((..((((((((....)))..)))))..)))))).((((((.(.(((((......)))))......((........))......)))))))..-.- ( -23.10) >DroPse_CAF1 26415 82 + 1 ACCG-UCUCUAAUUAGUUAUCUAAAGUUAGUUGGCGACACUAAUGGCAGUGGAAGUGCAGAAGC-------GAAA--CAAACAC--------UCGGCUAU ...(-((.(((((((..(......)..))))))).)))....(((((((((....(((....))-------)...--....)))--------)..))))) ( -17.70) >DroSim_CAF1 13663 96 + 1 GUCGCUCCCUAAUUAGUUAUCUAAAGUUAGUUGGCGACACUAAUGGCAGUGGCACUACAACUACAGCAACAGCAA--CAACUACGCCAGCAUUAGCC-U- ((((((..((((((((....)))..)))))..)))))).((((((((.((((........)))).((....))..--.......))))...))))..-.- ( -25.90) >DroEre_CAF1 29359 78 + 1 GCAGCUCCCUAAUUAGUUAUCUAAAGUUAGUUGGCGACACUAAUGGCAGUGGCACUACCAC--------------------UACUACAGCAUUAGCC-U- ((.(((..((((((((....)))..)))))..)))........(((.(((((.....))))--------------------).)))..)).......-.- ( -17.90) >DroYak_CAF1 27664 78 + 1 GUCGCCCCCUAAUUAGUUAUCUAAAGUUAGUUGGCGACACUAAUGGCAGUGGCACUACAAC--------------------UACUACAGCAUUAGCC-U- ((((((..((((((((....)))..)))))..)))))).((((((..(((((........)--------------------))))....))))))..-.- ( -22.50) >DroPer_CAF1 26127 82 + 1 ACCG-UCUCUAAUUAGUUAUCUAAAGUUAGUUGGCGACACUAAUGGCAGUGGAAGCGCAGAAGC-------GAAA--CAAACAC--------UCGGCUAU ...(-((.(((((((..(......)..))))))).)))....(((((((((....(((....))-------)...--....)))--------)..))))) ( -19.40) >consensus GCCGCUCCCUAAUUAGUUAUCUAAAGUUAGUUGGCGACACUAAUGGCAGUGGCACUACAAC__C_______G_AA__CAA_UAC_ACAGCAUUAGCC_U_ ((((((.((...((((....)))).((((((.(....))))))))).))))))............................................... (-10.99 = -11.43 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:25 2006