Locus 1331

Sequence ID 2R_DroMel_CAF1
Location 5,143,981 – 5,144,075
Length 94
Max. P 0.551867
window2305

overview

Window 5

Location 5,143,981 – 5,144,075
Length 94
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 82.55
Mean single sequence MFE -16.13
Consensus MFE -10.15
Energy contribution -10.32
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.90
Structure conservation index 0.63
SVM decision value 0.04
SVM RNA-class probability 0.551867
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5143981 94 + 20766785
AACAAUGCCCCAAGUUGCAACAAUAAAAUUCUGACACAUUGAAAAAUGUCAUUGUGUAACUUAAGUAGCCGG---CAUGCGAA-UGGAUGGGGAA-AUG
.......(((((..(((((..............(((((.(((......))).))))).......((.....)---).))))).-....)))))..-... ( -20.30)
>DroVir_CAF1 25928 75 + 1
AACAAUGCCCCAAGUUGCAACAAUAAAAUUCUGACACAUUGAAAAAUGUCAUUGUGUAACUUAAGUAGCCAA---CAU---------------------
.....(((...((((((((.((((...........(((((....))))).))))))))))))..))).....---...--------------------- ( -11.80)
>DroPse_CAF1 17865 99 + 1
AACAAUGCCCCAAGUUGCAACAAUAAAAUUCUGACACAUUGAAAAAUGUCAUUGUGUAACUUAAGUAGCCAGAGCCAUACAAAAUGGAAAUGGAGACUG
...........((((((((.((((...........(((((....))))).)))))))))))).(((..(((...((((.....))))...)))..))). ( -22.60)
>DroGri_CAF1 22630 75 + 1
AACAAUGCCCCAAGUUGCAACAAUAAAAUUCUGACACAUUGAAAAAUGUCAUUGUGUAACUUAAGUAGCCAA---CAU---------------------
.....(((...((((((((.((((...........(((((....))))).))))))))))))..))).....---...--------------------- ( -11.80)
>DroMoj_CAF1 25568 75 + 1
AACAAUGCCCCAAGUUCCAACAAUAAAAUUCUGACACAUUGAAAAAUGUCAUUGUGUAACUUAAGUAGCCAA---CAU---------------------
......((..(..((....))............(((((.(((......))).))))).......)..))...---...--------------------- (  -7.70)
>DroPer_CAF1 17496 99 + 1
AACAAUGCCCCAAGUUGCAACAAUAAAAUUCUGACACAUUGAAAAAUGUCAUUGUGUAACUUAAGUAGCCAGAGCCAUACAAAAUGGAAAUGGAGACUG
...........((((((((.((((...........(((((....))))).)))))))))))).(((..(((...((((.....))))...)))..))). ( -22.60)
>consensus
AACAAUGCCCCAAGUUGCAACAAUAAAAUUCUGACACAUUGAAAAAUGUCAUUGUGUAACUUAAGUAGCCAA___CAU_____________________
.....(((...((((((((.(((........(((((..........))))))))))))))))..)))................................ (-10.15 = -10.32 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:22 2006