Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,393,216 – 1,393,442 |
Length | 226 |
Max. P | 0.999463 |
Location | 1,393,216 – 1,393,336 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.83 |
Mean single sequence MFE | -27.28 |
Consensus MFE | -25.84 |
Energy contribution | -26.52 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.06 |
Mean z-score | -2.21 |
Structure conservation index | 0.95 |
SVM decision value | 3.17 |
SVM RNA-class probability | 0.998654 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1393216 120 - 20766785 AAAUUGCAUGCUCAUCUCUUAAGUGGGCAUGCUGCACUUAUUUUUAUUUAUUCAUGUUCUCACAGCCCCUUGUAGUUCUUUCAUCUGCGUUUUCCGCUGCGUUGCUGUCUUUUAAAAGCC .....((((((((((.......))))))))))........((((((......((.((...(.((((....(((((.........)))))......)))).)..)))).....)))))).. ( -25.10) >DroSec_CAF1 19717 120 - 1 AAAUUGCAUGCUCAUCUCUUAAGUGGGCAUGCUGCACUUAUUUUUAUUUAUUCAUGUUCUCGCCGCCCCUUGUAGUUCUUUCAUCUGCGUUUUCCGCUGCGUUGCUGUCUUUUAAAAGCC .....((((((((((.......))))))))))........((((((......((.((...(((.((....(((((.........)))))......)).)))..)))).....)))))).. ( -25.90) >DroSim_CAF1 24862 120 - 1 AAAUUGCAUGCUCAUCUCUUAAGUGGGCAUGCUGCACUUAUUUUUAUUUAUUCAUGUUCUCGCCGCCCCUUGCAGUUCUUUCAUCUGCGUUUUCCGCUGCGUUGCUGUCUUUUAAAAGCC .....((((((((((.......))))))))))........((((((......((.((...(((.((....(((((.........)))))......)).)))..)))).....)))))).. ( -27.90) >DroEre_CAF1 18717 120 - 1 AAAUUGCAUGCUCAUCUCUUAAGUGGGCAUGCUGCACUUAUUUUUAUUUAUUCAUGCUCUCGCAGCCCCUUGUAGUUCUUUCAUCUGCGUUUUCCGCUGCGUUGCUGUCUUUUAAAAGCC .....((((((((((.......))))))))))........((((((......((.((...((((((....(((((.........)))))......))))))..)))).....)))))).. ( -32.10) >DroYak_CAF1 20304 120 - 1 AAAUUGCAUGCUCAUCUCUUAAGUGGGCAUGGUGCACUUAUUUUUAUUUAUUCAUGUUCUCGCAGCCCCUUGUAGUUCUUUCAUCUGCGUUUUCCGCUGCGUUGCCGUCUUUUAAAAGCC ......(((((((((.......))))))))).........((((((.........((...((((((....(((((.........)))))......))))))..)).......)))))).. ( -25.39) >consensus AAAUUGCAUGCUCAUCUCUUAAGUGGGCAUGCUGCACUUAUUUUUAUUUAUUCAUGUUCUCGCAGCCCCUUGUAGUUCUUUCAUCUGCGUUUUCCGCUGCGUUGCUGUCUUUUAAAAGCC .....((((((((((.......))))))))))........((((((......((.((...((((((....(((((.........)))))......))))))..)))).....)))))).. (-25.84 = -26.52 + 0.68)
Location | 1,393,256 – 1,393,376 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.83 |
Mean single sequence MFE | -25.60 |
Consensus MFE | -23.50 |
Energy contribution | -24.14 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.03 |
Mean z-score | -2.74 |
Structure conservation index | 0.92 |
SVM decision value | 3.63 |
SVM RNA-class probability | 0.999463 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1393256 120 + 20766785 AAGAACUACAAGGGGCUGUGAGAACAUGAAUAAAUAAAAAUAAGUGCAGCAUGCCCACUUAAGAGAUGAGCAUGCAAUUUUAAAUAAGAAUUAAGAGCACAAAACUGUUCAACAAGCCAG .............((((((..((((((......))........((((.((((((.((((....)).)).))))))((((((.....))))))....))))......)))).)).)))).. ( -27.70) >DroSec_CAF1 19757 120 + 1 AAGAACUACAAGGGGCGGCGAGAACAUGAAUAAAUAAAAAUAAGUGCAGCAUGCCCACUUAAGAGAUGAGCAUGCAAUUUUAAAUAAGAAUUAAGAGCACAAAACUGUUCAACAAGCCAG .............(((.....((((((......))........((((.((((((.((((....)).)).))))))((((((.....))))))....))))......)))).....))).. ( -25.50) >DroSim_CAF1 24902 120 + 1 AAGAACUGCAAGGGGCGGCGAGAACAUGAAUAAAUAAAAAUAAGUGCAGCAUGCCCACUUAAGAGAUGAGCAUGCAAUUUUAAAUAAGAAUUAAGAGCACAAAACUGUUCAACAAGCCAG ..(..((....))..)(((..((((((......))........((((.((((((.((((....)).)).))))))((((((.....))))))....))))......)))).....))).. ( -25.70) >DroEre_CAF1 18757 120 + 1 AAGAACUACAAGGGGCUGCGAGAGCAUGAAUAAAUAAAAAUAAGUGCAGCAUGCCCACUUAAGAGAUGAGCAUGCAAUUUUAAAUAAGAAUUAAGAGCACAAAACUGUUCAACAAGCCAG .............((((((....)).((((((..((....)).((((.((((((.((((....)).)).))))))((((((.....))))))....)))).....))))))...)))).. ( -29.20) >DroYak_CAF1 20344 120 + 1 AAGAACUACAAGGGGCUGCGAGAACAUGAAUAAAUAAAAAUAAGUGCACCAUGCCCACUUAAGAGAUGAGCAUGCAAUUUUAAAUAAGAAUUAAGAGCACAAAACUUUUCAACAAGCCAG .............((((..(((((.((......))........((((..(((((.((((....)).)).))))).((((((.....))))))....)))).....)))))....)))).. ( -19.90) >consensus AAGAACUACAAGGGGCUGCGAGAACAUGAAUAAAUAAAAAUAAGUGCAGCAUGCCCACUUAAGAGAUGAGCAUGCAAUUUUAAAUAAGAAUUAAGAGCACAAAACUGUUCAACAAGCCAG .............((((....((((((......))........((((.((((((.((((....)).)).))))))((((((.....))))))....))))......))))....)))).. (-23.50 = -24.14 + 0.64)
Location | 1,393,256 – 1,393,376 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.83 |
Mean single sequence MFE | -25.43 |
Consensus MFE | -22.93 |
Energy contribution | -23.93 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.33 |
Structure conservation index | 0.90 |
SVM decision value | 2.75 |
SVM RNA-class probability | 0.996798 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1393256 120 - 20766785 CUGGCUUGUUGAACAGUUUUGUGCUCUUAAUUCUUAUUUAAAAUUGCAUGCUCAUCUCUUAAGUGGGCAUGCUGCACUUAUUUUUAUUUAUUCAUGUUCUCACAGCCCCUUGUAGUUCUU ..((((((..(((((.....((((..((((.......))))....((((((((((.......)))))))))).)))).................))))).)).))))............. ( -27.65) >DroSec_CAF1 19757 120 - 1 CUGGCUUGUUGAACAGUUUUGUGCUCUUAAUUCUUAUUUAAAAUUGCAUGCUCAUCUCUUAAGUGGGCAUGCUGCACUUAUUUUUAUUUAUUCAUGUUCUCGCCGCCCCUUGUAGUUCUU ..(((.....(((((.....((((..((((.......))))....((((((((((.......)))))))))).)))).................))))).....)))............. ( -25.75) >DroSim_CAF1 24902 120 - 1 CUGGCUUGUUGAACAGUUUUGUGCUCUUAAUUCUUAUUUAAAAUUGCAUGCUCAUCUCUUAAGUGGGCAUGCUGCACUUAUUUUUAUUUAUUCAUGUUCUCGCCGCCCCUUGCAGUUCUU ..(((.....(((((.....((((..((((.......))))....((((((((((.......)))))))))).)))).................)))))..)))((.....))....... ( -26.05) >DroEre_CAF1 18757 120 - 1 CUGGCUUGUUGAACAGUUUUGUGCUCUUAAUUCUUAUUUAAAAUUGCAUGCUCAUCUCUUAAGUGGGCAUGCUGCACUUAUUUUUAUUUAUUCAUGCUCUCGCAGCCCCUUGUAGUUCUU ..(((...............((((..((((.......))))....((((((((((.......)))))))))).)))).................(((....))))))............. ( -25.10) >DroYak_CAF1 20344 120 - 1 CUGGCUUGUUGAAAAGUUUUGUGCUCUUAAUUCUUAUUUAAAAUUGCAUGCUCAUCUCUUAAGUGGGCAUGGUGCACUUAUUUUUAUUUAUUCAUGUUCUCGCAGCCCCUUGUAGUUCUU ..(((......((((((...((((.(((((.......)))).....(((((((((.......)))))))))).))))..)))))).........(((....))))))............. ( -22.60) >consensus CUGGCUUGUUGAACAGUUUUGUGCUCUUAAUUCUUAUUUAAAAUUGCAUGCUCAUCUCUUAAGUGGGCAUGCUGCACUUAUUUUUAUUUAUUCAUGUUCUCGCAGCCCCUUGUAGUUCUU ..((((....(((((.....((((..((((.......))))....((((((((((.......)))))))))).)))).................)))))....))))............. (-22.93 = -23.93 + 1.00)
Location | 1,393,296 – 1,393,416 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.80 |
Mean single sequence MFE | -26.42 |
Consensus MFE | -21.22 |
Energy contribution | -21.82 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.74 |
Structure conservation index | 0.80 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.829978 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1393296 120 - 20766785 CUCCCCUCUCUCGUGGACGACCACUUUUGUGUCGUUGCAUCUGGCUUGUUGAACAGUUUUGUGCUCUUAAUUCUUAUUUAAAAUUGCAUGCUCAUCUCUUAAGUGGGCAUGCUGCACUUA ............(((((((((.((....))))))))((((..((((.(.....)))))..)))).....................((((((((((.......))))))))))..)))... ( -31.20) >DroSec_CAF1 19797 120 - 1 CUCCCCUCUCUCGUGGACUGCCACUUUUGUGUCGUUGCAUCUGGCUUGUUGAACAGUUUUGUGCUCUUAAUUCUUAUUUAAAAUUGCAUGCUCAUCUCUUAAGUGGGCAUGCUGCACUUA ............((((....))))....((((....((((..((((.(.....)))))..)))).....................((((((((((.......)))))))))).))))... ( -28.90) >DroSim_CAF1 24942 107 - 1 CUCCCCUCUCUC-------------UUUGUGUCGUUGCAUCUGGCUUGUUGAACAGUUUUGUGCUCUUAAUUCUUAUUUAAAAUUGCAUGCUCAUCUCUUAAGUGGGCAUGCUGCACUUA ............-------------...((((....((((..((((.(.....)))))..)))).....................((((((((((.......)))))))))).))))... ( -24.10) >DroEre_CAF1 18797 120 - 1 CGCCCCUCUCUCGUGGACUCCUACUUUUGUGUCGUUGCAUCUGGCUUGUUGAACAGUUUUGUGCUCUUAAUUCUUAUUUAAAAUUGCAUGCUCAUCUCUUAAGUGGGCAUGCUGCACUUA ............((((....))))....((((....((((..((((.(.....)))))..)))).....................((((((((((.......)))))))))).))))... ( -26.80) >DroYak_CAF1 20384 98 - 1 CUCCCCUC----------------------GUCGUUGCAUCUGGCUUGUUGAAAAGUUUUGUGCUCUUAAUUCUUAUUUAAAAUUGCAUGCUCAUCUCUUAAGUGGGCAUGGUGCACUUA ........----------------------.....((((((..((...((((((((..(((......)))..))).)))))....))((((((((.......)))))))))))))).... ( -21.10) >consensus CUCCCCUCUCUCGUGGAC__C_ACUUUUGUGUCGUUGCAUCUGGCUUGUUGAACAGUUUUGUGCUCUUAAUUCUUAUUUAAAAUUGCAUGCUCAUCUCUUAAGUGGGCAUGCUGCACUUA ............................((((....((((..((((........))))..)))).....................((((((((((.......)))))))))).))))... (-21.22 = -21.82 + 0.60)
Location | 1,393,336 – 1,393,442 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.53 |
Mean single sequence MFE | -20.93 |
Consensus MFE | -15.94 |
Energy contribution | -16.50 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.09 |
Mean z-score | -1.60 |
Structure conservation index | 0.76 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.759427 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1393336 106 - 20766785 --------------GUACCUCAAACGCAAGACUUUUCAUCCUCCCCUCUCUCGUGGACGACCACUUUUGUGUCGUUGCAUCUGGCUUGUUGAACAGUUUUGUGCUCUUAAUUCUUAUUUA --------------..........(((((((((.((((......((......(((((((((.((....)))))))).)))..)).....)))).)))))))))................. ( -22.20) >DroSec_CAF1 19837 106 - 1 --------------AUACCUCCUACGCAAGACUUUUCAACCUCCCCUCUCUCGUGGACUGCCACUUUUGUGUCGUUGCAUCUGGCUUGUUGAACAGUUUUGUGCUCUUAAUUCUUAUUUA --------------..........(((((((((.((((((.(((.(......).)))..((((....(((......)))..))))..)))))).)))))))))................. ( -24.50) >DroSim_CAF1 24982 93 - 1 --------------GCACCUCGAACGCAAGACUUUUCAACCUCCCCUCUCUC-------------UUUGUGUCGUUGCAUCUGGCUUGUUGAACAGUUUUGUGCUCUUAAUUCUUAUUUA --------------.......((.(((((((((.((((((....((......-------------..(((......)))...))...)))))).))))))))).)).............. ( -18.80) >DroEre_CAF1 18837 120 - 1 GUAUGUAGCUGUAUGUAUCUCAAACGCAAGACUUUUCAGCCGCCCCUCUCUCGUGGACUCCUACUUUUGUGUCGUUGCAUCUGGCUUGUUGAACAGUUUUGUGCUCUUAAUUCUUAUUUA (((((((....)))))))......(((((((((.((((((.(((........((((....))))...(((......)))...)))..)))))).)))))))))................. ( -25.10) >DroYak_CAF1 20424 86 - 1 ------------ACAUACCUCAAACGCAAGAAUUUUCAGCCUCCCCUC----------------------GUCGUUGCAUCUGGCUUGUUGAAAAGUUUUGUGCUCUUAAUUCUUAUUUA ------------............(((((((.((((((((....((..----------------------............))...)))))))).)))))))................. ( -14.04) >consensus ______________GUACCUCAAACGCAAGACUUUUCAACCUCCCCUCUCUCGUGGAC__C_ACUUUUGUGUCGUUGCAUCUGGCUUGUUGAACAGUUUUGUGCUCUUAAUUCUUAUUUA ........................(((((((((.((((((............((((....))))......((((.......))))..)))))).)))))))))................. (-15.94 = -16.50 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:28:49 2006