Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,139,021 – 5,139,136 |
Length | 115 |
Max. P | 0.988336 |
Location | 5,139,021 – 5,139,136 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 91.67 |
Mean single sequence MFE | -28.68 |
Consensus MFE | -25.59 |
Energy contribution | -25.65 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.05 |
Mean z-score | -2.60 |
Structure conservation index | 0.89 |
SVM decision value | 2.12 |
SVM RNA-class probability | 0.988336 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5139021 115 + 20766785 AAAACUAAACCAAAGCCGGGGGGAAAAAAUAACUGGUGGGCGAAAGCCAAUCCCAAAGAAAGCGGAUAGCAUUUGUCCCGCCACAGGAUAAUGAAAUUGGUAUAAGGCAGCAGCA ........(((((....((.((((.(((.....(((..(((....)))....)))......((.....)).))).)))).)).((......))...))))).....((....)). ( -29.60) >DroSec_CAF1 14928 113 + 1 AAAACUAAACCAAAACCGGGGGGAAAAAAUAAAUGGUGGGCGAAAGCCAAUCCCAAAGAAAGCGGAUAGCAUUUGUCCCGCCACAGGAUAAUGAAAUUGGUAUAAGGCAGGAA-- ........(((((....((.((((.(((.....(((..(((....)))....)))......((.....)).))).)))).)).((......))...)))))............-- ( -28.80) >DroEre_CAF1 13875 111 + 1 A-AACUAAACCAAAGCCGGGGGGAAUAAAUAACUGGUGGGCAAAAGCCAAUGCCAAAGAAAGCGGAUAGCAUUUGUCCUGCCACAGGAUACUGAAAUUGGUAUAAGGCACG---A .-............(((((.((((.(((((...((((.(((....)))...))))......((.....))))))))))).)).(((....)))............)))...---. ( -30.50) >DroYak_CAF1 14815 111 + 1 A-AACUAAACCAAAACCGGGGGGAAUAAAUAACUGGUGGGCAAAAGCCAAUCCCAAAGAAAGCGGAUAGCAUUUGUCCCGCCACAGGAUAAUGAAAAUGGUAUAAGACAGA---A .-......((((...((....))..........(((((((((((.((..(((((.......).)))).)).)))).)))))))..............))))..........---. ( -25.80) >consensus A_AACUAAACCAAAACCGGGGGGAAAAAAUAACUGGUGGGCAAAAGCCAAUCCCAAAGAAAGCGGAUAGCAUUUGUCCCGCCACAGGAUAAUGAAAUUGGUAUAAGGCAGG___A ........(((((....((.((((.........(((..(((....)))....)))......((.....)).....)))).)).((......))...))))).............. (-25.59 = -25.65 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:20 2006