Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,138,684 – 5,138,777 |
Length | 93 |
Max. P | 0.937968 |
Location | 5,138,684 – 5,138,777 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 78.26 |
Mean single sequence MFE | -27.24 |
Consensus MFE | -17.83 |
Energy contribution | -19.56 |
Covariance contribution | 1.73 |
Combinations/Pair | 1.19 |
Mean z-score | -2.06 |
Structure conservation index | 0.65 |
SVM decision value | 1.27 |
SVM RNA-class probability | 0.937968 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5138684 93 - 20766785 CAGACAGUGGCCAGUUGGCAAUUCGACUGAUGUUCCUGGGGU-UCAGGGGCUAAAGUUUAAUUGGCUAGUUUAAUUGUCAGAGGGACUGGCAAA .((((..((((((((((.......((((...(((((((....-.)))))))...))))))))))))))))))..(((((((.....))))))). ( -31.11) >DroVir_CAF1 20443 76 - 1 CAUACAGAGGCAAAUG-G---CUGAACAGUUGUUUU--GCGU-CCA--GGCCAAAGUUUAAUUGGCUAGUUUAAUUGUCAGCA---------AA ................-(---((((.((((((....--((..-...--((((((.......)))))).)).))))))))))).---------.. ( -17.90) >DroSec_CAF1 14597 87 - 1 CAGACAGUGGCCAGUUGGCCAUUCGACUGAUGUUCCUGGGGU-UCAGGGGCUAAAGUUUAAUUGGCUAGUUUAAUUGUCAGAG------GCAAA ..((((((....(..((((((...((((...(((((((....-.)))))))...))))....))))))..)..))))))....------..... ( -28.20) >DroEre_CAF1 13542 94 - 1 CAGACAGUGGCCAGUUGGCCAUUGGACUGAUGUUCCUGGGGUUUCAGGGGCUAAAGUUUAAUUGGCUAGUUUAAUUGUCAGAGGGACUGGCAAG ....((((((((....))))))))((((...((((((((....))))))))...))))......((((((((...........))))))))... ( -35.10) >DroYak_CAF1 14499 93 - 1 CAGACAGUGGCCAGUUGGCCAUUGGACUGAUGUUCCUGGGGU-UCAGGGGCUAAAGUUUAAUUGGCUAGUUUAAUUGUCAGAGGGACUGGCACA ....((((((((....))))))))((((...(((((((....-.)))))))...))))......((((((((...........))))))))... ( -34.80) >DroMoj_CAF1 20232 76 - 1 CAAGCAGAGGCCAAUG-G---CUGAGCUGUUGUUUU--GCGU-CCA--GGCUAAAGUUUAAUUGGCUAGUUUAAUUGUCAGCA---------AA ..(((((.((((...)-)---))...)))))..(((--((..-..(--(((....))))...((((..........)))))))---------)) ( -16.30) >consensus CAGACAGUGGCCAGUUGGCCAUUGGACUGAUGUUCCUGGGGU_UCAGGGGCUAAAGUUUAAUUGGCUAGUUUAAUUGUCAGAG______GCAAA ..(((((((((((((.......((((((...((((((((....))))))))...)))))))))))))......))))))............... (-17.83 = -19.56 + 1.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:19 2006