Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,138,206 – 5,138,299 |
Length | 93 |
Max. P | 0.900967 |
Location | 5,138,206 – 5,138,299 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 76.67 |
Mean single sequence MFE | -16.47 |
Consensus MFE | -11.09 |
Energy contribution | -11.28 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.08 |
Mean z-score | -1.63 |
Structure conservation index | 0.67 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.900967 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5138206 93 - 20766785 UAUUGUUAGUGACACUCUUUCAGCAUUAAGUGUGUACAUGACAAGCACACCAUCACACACA---CACACAAACACACCCAUGCGGGACUACAAACA ..((((((...((((.(((........))).))))...)))))).................---............(((....))).......... ( -16.00) >DroPse_CAF1 12633 92 - 1 UAUUGUUAGUGACACUCUUUCAGCAUUAAGUGUGUACAUGACACACACACCACUCCACACACCACAC---CACACACAGAUACAGAUGCAGAUAC- ......................(((((..((((((.....)))))).....................---..(.....).....)))))......- ( -10.90) >DroSec_CAF1 14156 85 - 1 UAUUGUUAGUGACACUCUUUCAGCAUUAAGUGUGUACAUGACAAGCACACCCUCACACACA---CA--------CACCCAUGCGGGACUACAAACA ..((((((...((((.(((........))).))))...)))))).................---..--------..(((....))).......... ( -16.00) >DroEre_CAF1 13105 87 - 1 UAUUGUUAGUGACACUCUUUCAGCAUUAAGUGUGUACAUGACAAGCACACCCUCACACCCA---CAC------ACACCCAUGCUGGGCUACACACA ..((((((...((((.(((........))).))))...)))))).............((((---((.------.......)).))))......... ( -16.50) >DroYak_CAF1 14056 85 - 1 UAUUGUUAGUGACACUCUUUCAGCAUUAAGUGUGUACAUGACAAGCACACCCUCACACCCU---U--------ACACCCAGGCGGGACUACAAACA ..((((((...((((.(((........))).))))...)))))).................---.--------...(((....))).......... ( -16.00) >DroMoj_CAF1 19796 77 - 1 UAUUGUUAGUGACACUCUUUCAGCAUUAAGUGUGUACAGGGCAAACACACAGUAGCAUACG---CGU------------GUGUGUGUGUGUG---- ..(((((....((((.(((........))).))))....)))))(((((((...(((((..---..)------------)))).))))))).---- ( -23.40) >consensus UAUUGUUAGUGACACUCUUUCAGCAUUAAGUGUGUACAUGACAAGCACACCCUCACACACA___CAC______ACACCCAUGCGGGACUACAAACA ..((((((...((((.(((........))).))))...)))))).................................................... (-11.09 = -11.28 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:18 2006