| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,133,747 – 5,133,837 |
| Length | 90 |
| Max. P | 0.968829 |
| Location | 5,133,747 – 5,133,837 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 74.27 |
| Mean single sequence MFE | -26.18 |
| Consensus MFE | -15.95 |
| Energy contribution | -15.23 |
| Covariance contribution | -0.72 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.61 |
| SVM decision value | 1.63 |
| SVM RNA-class probability | 0.968829 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5133747 90 - 20766785 -AGCAAUGGCUCGAACUGAA-----------U-GG---AGCAUUGUGU--------CCUGACGGCGAUGAAUGUAAGCGAUUUAUUUUAUGAUUUAUUGCGUAUACUUAUUGUG -.((((((.(((.(......-----------)-.)---))))))))..--------.......(((((((.((((.(((((..(((....)))..))))).)))).))))))). ( -23.00) >DroPse_CAF1 8053 92 - 1 -UGCUGUGCAUUGAGUCCUG-----------G-GA---GGCAUUGUGCA---C---CCUGACAACGAUGAAUGUAAGCGAUUUAUUUUAUGAUUUAUUGCGUACACUUAUUGUA -.............(((..(-----------(-(.---.((.....)).---)---)).))).(((((((.((((.(((((..(((....)))..))))).)))).))))))). ( -25.60) >DroGri_CAF1 11508 105 - 1 -AGGAGGGGCAUGCAGCAUG-----UGGCAG---AGCCAGCAUUGUGCAGCAGCAAACUGACAGCGAUGAAUGUAAGCGAUUUAUUUUAUGAUUUAUUGCGUAUACUCAUUGUA -.(..((.((.(((.(((((-----((((..---.))))....))))).)))))...))..).(((((((.((((.(((((..(((....)))..))))).)))).))))))). ( -31.50) >DroWil_CAF1 11927 92 - 1 GAGGAAUGC--GGUGCUGUA-----------U-AU---GGCAUUGUGCAA--C---ACUGACAGCGAUGAAUGUAAGCGAUUUAUUUUAUGAUUUAUUGCUUAUACUUAUUGUA ......(((--((((.((((-----------(-(.---.....)))))).--)---)))).))(((((((.((((((((((..(((....)))..)))))))))).))))))). ( -30.50) >DroAna_CAF1 32339 101 - 1 -AGGAAUGGCUCGAACUGAAGUAUACUGAA-UGGG---AGCAUUGUGC--------ACUGACAGCGAUGAAUGUAAGCGAUUUAUUUUAUGAUUUAUUGCGUAUACUUAUUGUG -.............((..((((((((..((-((..---..))))....--------.......((((((((((((((........))))).)))))))))))))))))...)). ( -20.90) >DroPer_CAF1 7766 92 - 1 -UGCUGUGCAUUGAGUCCUG-----------G-GA---GGCAUUGUGCA---C---CCUGACAACGAUGAAUGUAAGCGAUUUAUUUUAUGAUUUAUUGCGUACACUUAUUGUA -.............(((..(-----------(-(.---.((.....)).---)---)).))).(((((((.((((.(((((..(((....)))..))))).)))).))))))). ( -25.60) >consensus _AGCAAUGCCUUGAACCGUA___________U_GA___AGCAUUGUGCA___C___ACUGACAGCGAUGAAUGUAAGCGAUUUAUUUUAUGAUUUAUUGCGUAUACUUAUUGUA .......................................((.....))...............(((((((.((((.(((((..(((....)))..))))).)))).))))))). (-15.95 = -15.23 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:16 2006