Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,114,460 – 5,114,580 |
Length | 120 |
Max. P | 0.609979 |
Location | 5,114,460 – 5,114,580 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.11 |
Mean single sequence MFE | -44.65 |
Consensus MFE | -27.04 |
Energy contribution | -25.85 |
Covariance contribution | -1.19 |
Combinations/Pair | 1.48 |
Mean z-score | -1.82 |
Structure conservation index | 0.61 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.609979 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5114460 120 - 20766785 GCUCUUCGGGAUUGGUUGGCCAAGCAACCUCAUCUGAGGGCCCGCCAGGAUGACCAGUUCCUAGUUGGCUUCUUGCGAGGCUGCAAGUUUAGCCUGGAGAAGACCAAGUCCAAGCUGGAU (.(((((((((((((((..((..((..((((....))))....))..))..)))))))))).....((((.((((((....))))))...))))....))))).)..((((.....)))) ( -46.70) >DroVir_CAF1 21927 120 - 1 GCUCUGCGGGAUUGGCUGGCCAAGCAGCCGCAUCUAAAAUGCCGCCAGGAUGCACAGUUUUUGGUUGCCUUUCUGCGCGGCUGCAAAUUCAGCCUGGAGAAGGCCAAAUCCAAGCUGGAU ..(((((.(((((((((((....((((((((..(..(((.((.(((((((........))))))).)).)))..).))))))))....))))))(((......))))))))..)).))). ( -45.90) >DroGri_CAF1 21934 120 - 1 GCACUGCGAGAUUGGUUGGCCAAACAGCCGCAUUUGAAAGCACGCCAAGAUGCACAAUUUCUCGUUGCCUUUCUGCGGGGUUGCAAGUUCAGUCUGGAGAAGGCCAAAUCCAAACUGGAU (((..((((((..(((((......)))))((((((............))))))......)))))).(((((.....))))))))..(((((((.((((..........)))).))))))) ( -36.30) >DroWil_CAF1 27101 120 - 1 GCUCUACGUGAUUGGUUGUCCAAGCAGCCACAUCUCAAGGCCCGUCAAGAUUCGCAAUUUCUUGUGGCCUUCUUGCGUGGCUGUAAAUUUAGUUUGGAGAAGACCAAAUCGAAAUUGGAU ..((((..(((((((((.(((((((((((((.....((((((...(((((.........))))).)))))).....)))))))).........)))))...)))).)))))....)))). ( -40.90) >DroMoj_CAF1 24941 120 - 1 GCUCUGCGGGAUUGGCUAGCCAAGCAGCCGCACCUGAAGGCACGCCAGGAUGCUCAGUUCCUGGUUGCCUUUCUGCGCGGCUGCAAGUUCAGCCUAGAGAAGGCCAAGUCCAAGCUGGAC .(((((.((..((((....))))((((((((.(..(((((((.(((((((........))))))))))))))..).))))))))........)))))))........((((.....)))) ( -57.10) >DroAna_CAF1 28936 120 - 1 GCUCUCAGGGAUUGGCUGUCCAAGCAACCGCAUCUGAAGGCCCGUCAGGAUGACCAGUUCCUCGUGGGAUUCCUGCGCGGCUGUAAGUUCAGUCUGGAGAAGACCAAAUCCAAGCUGGAU ((..((((((((.....))))..((....))..))))..))(((((((((...(((........)))...))))).))))......((((((..((((..........))))..)))))) ( -41.00) >consensus GCUCUGCGGGAUUGGCUGGCCAAGCAGCCGCAUCUGAAGGCCCGCCAGGAUGCACAGUUCCUCGUUGCCUUCCUGCGCGGCUGCAAGUUCAGCCUGGAGAAGACCAAAUCCAAGCUGGAU ...........((((....))))((((((((.((....))...(.(((((....................))))))))))))))..(((((((.((((..........)))).))))))) (-27.04 = -25.85 + -1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:07 2006