Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,391,996 – 1,392,192 |
Length | 196 |
Max. P | 0.973528 |
Location | 1,391,996 – 1,392,112 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.60 |
Mean single sequence MFE | -29.14 |
Consensus MFE | -26.39 |
Energy contribution | -26.39 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.12 |
Mean z-score | -1.63 |
Structure conservation index | 0.91 |
SVM decision value | 1.71 |
SVM RNA-class probability | 0.973528 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1391996 116 - 20766785 AAAUAAACUGUGUUCACAAAGCACGGCUUUGUGUGAGCAGUCAAAGGAGAAGCAGACCGAAGUUCAGACGGAGCAUUAUUUUUUCA----UUUUUUAUUGUCUGCCAUUUUCUAACACUU ......(((((...((((((((...))))))))...)))))....((((((((((((....((((.....))))...........(----(.....)).))))))..))))))....... ( -28.20) >DroSec_CAF1 18775 116 - 1 AAAUAAACUGUGCUCACAAAGCACGGCUUUGUGUGAGCAGUCAAAGGAGAAGCAGACCGAAGUUCAGACGGAGCAUUAUUUUUUCG----GUUUUUAUUGUCUGCCAUUUUCUAACACUU ......(((((.(.((((((((...)))))))).).)))))....((((((((((((...(((..((((.(((.........))).----))))..)))))))))..))))))....... ( -31.40) >DroSim_CAF1 23609 116 - 1 AAAUAAACUGUGCUCACAAAGCACGGCUUUGUGUGAGCAGUCAAAGGAGAAGCAGACCGAAGUUCAGACGGAGCAUUAUUUUUUCG----GUUUUUAUUGUCUGCCAUUUUCUAACACUU ......(((((.(.((((((((...)))))))).).)))))....((((((((((((...(((..((((.(((.........))).----))))..)))))))))..))))))....... ( -31.40) >DroEre_CAF1 17241 116 - 1 AAAUAAACUGUGUUCACAAAGCACGGCUUUGUGUGAGCAGUCAAAGGAGAAGCAGACCGAAGUUCAGACAGAACAUUAUUUUUUCG----GCCUUUAUUGUCUGCCAUUUUCUAACACUU ......(((((...((((((((...))))))))...)))))....((((((((((((.((((..(.((.((((.....)))).)))----..))))...))))))..))))))....... ( -31.60) >DroYak_CAF1 16364 120 - 1 AAAUAAACUGUGUUCACAAAGCACGGCAUUGUGUAAGCAGUCAAAGGAGAAACAGACCGAGGUUCAGACUGAGCAAUAUUUUUUUAUUAUUCUUUUAUUUUCUGUCAUUUUCUAACACUU ......(((((...(((((.((...)).)))))...)))))....(((((((((((.....((((.....))))((((......))))............)))))..))))))....... ( -23.10) >consensus AAAUAAACUGUGUUCACAAAGCACGGCUUUGUGUGAGCAGUCAAAGGAGAAGCAGACCGAAGUUCAGACGGAGCAUUAUUUUUUCG____GUUUUUAUUGUCUGCCAUUUUCUAACACUU ......(((((...((((((((...))))))))...)))))....((((((((((((((((((((.....))))........)))).............))))))..))))))....... (-26.39 = -26.39 + 0.00)
Location | 1,392,032 – 1,392,152 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.25 |
Mean single sequence MFE | -33.46 |
Consensus MFE | -29.56 |
Energy contribution | -29.88 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.10 |
Mean z-score | -1.44 |
Structure conservation index | 0.88 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.878916 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1392032 120 - 20766785 AUUUUCUGGGUCAAUUUUGCAGACAGCAGCCGUUUGACUAAAAUAAACUGUGUUCACAAAGCACGGCUUUGUGUGAGCAGUCAAAGGAGAAGCAGACCGAAGUUCAGACGGAGCAUUAUU ....((((.(.......).))))..((..((((((((((.......(((((...((((((((...))))))))...)))))....((.........))..)).)))))))).))...... ( -32.70) >DroSec_CAF1 18811 120 - 1 AUUUUCUGGGUCAAUUUGGCAGACAGCAGCCGUUUGACUAAAAUAAACUGUGCUCACAAAGCACGGCUUUGUGUGAGCAGUCAAAGGAGAAGCAGACCGAAGUUCAGACGGAGCAUUAUU .((((((.((((((..((((........)))).)))))).......(((((.(.((((((((...)))))))).).)))))....))))))..........((((.....))))...... ( -34.60) >DroSim_CAF1 23645 120 - 1 AUUUUCUGGGUCAAUUUGGCAGACAGCAGCCGUUUGACUAAAAUAAACUGUGCUCACAAAGCACGGCUUUGUGUGAGCAGUCAAAGGAGAAGCAGACCGAAGUUCAGACGGAGCAUUAUU .((((((.((((((..((((........)))).)))))).......(((((.(.((((((((...)))))))).).)))))....))))))..........((((.....))))...... ( -34.60) >DroEre_CAF1 17277 120 - 1 AUUUUCUGGGUCAAUUUUGCAGGCAGCUGCCGUUUGGCUAAAAUAAACUGUGUUCACAAAGCACGGCUUUGUGUGAGCAGUCAAAGGAGAAGCAGACCGAAGUUCAGACAGAACAUUAUU ...(((((..(.(((((((..(((....)))(((((.((.......(((((...((((((((...))))))))...)))))......))...)))))))))))).)..)))))....... ( -34.22) >DroYak_CAF1 16404 120 - 1 ACUUUCUGGGUCAAUUUAUCAGGCAGCUGCCGUUUGACUAAAAUAAACUGUGUUCACAAAGCACGGCAUUGUGUAAGCAGUCAAAGGAGAAACAGACCGAGGUUCAGACUGAGCAAUAUU .....((.((((..(((.((.(((....))).(((((((...((((.(((((((.....)))))))..))))......))))))).)).)))..)))).))((((.....))))...... ( -31.20) >consensus AUUUUCUGGGUCAAUUUGGCAGACAGCAGCCGUUUGACUAAAAUAAACUGUGUUCACAAAGCACGGCUUUGUGUGAGCAGUCAAAGGAGAAGCAGACCGAAGUUCAGACGGAGCAUUAUU ........((((..((((((((((.......))))).)))))....(((((...((((((((...))))))))...))))).............))))...((((.....))))...... (-29.56 = -29.88 + 0.32)
Location | 1,392,072 – 1,392,192 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.67 |
Mean single sequence MFE | -27.10 |
Consensus MFE | -21.87 |
Energy contribution | -21.43 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.18 |
Mean z-score | -1.41 |
Structure conservation index | 0.81 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.582243 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1392072 120 + 20766785 CUGCUCACACAAAGCCGUGCUUUGUGAACACAGUUUAUUUUAGUCAAACGGCUGCUGUCUGCAAAAUUGACCCAGAAAAUGCACAGCGAAAUAAUAAAAAAUUUAGCGGACCCAAGAAAU (((((..((((((((...))))))))........(((((((((((....))))(((((..(((...((......))...)))))))))))))))..........)))))........... ( -26.90) >DroSec_CAF1 18851 120 + 1 CUGCUCACACAAAGCCGUGCUUUGUGAGCACAGUUUAUUUUAGUCAAACGGCUGCUGUCUGCCAAAUUGACCCAGAAAAUGCACAGCGAAGUAAUAAAAAAUUUAGCGGACCCAAGAAAU (((((..((((((((...)))))))).((...((.((((((.(((((..(((........)))...)))))....)))))).)).)).................)))))........... ( -27.60) >DroSim_CAF1 23685 120 + 1 CUGCUCACACAAAGCCGUGCUUUGUGAGCACAGUUUAUUUUAGUCAAACGGCUGCUGUCUGCCAAAUUGACCCAGAAAAUGCACAGCGAAGUAAUAAAAAAUUUAGCGGACCCAAGAAAU (((((..((((((((...)))))))).((...((.((((((.(((((..(((........)))...)))))....)))))).)).)).................)))))........... ( -27.60) >DroEre_CAF1 17317 120 + 1 CUGCUCACACAAAGCCGUGCUUUGUGAACACAGUUUAUUUUAGCCAAACGGCAGCUGCCUGCAAAAUUGACCCAGAAAAUGCACAGCAAAGCAAUCAAAAAUUUAGCGGACCCAAGAAAU (((((..((((((((...))))))))......((((......(((....))).((((..((((...((......))...)))))))).))))............)))))........... ( -28.30) >DroYak_CAF1 16444 120 + 1 CUGCUUACACAAUGCCGUGCUUUGUGAACACAGUUUAUUUUAGUCAAACGGCAGCUGCCUGAUAAAUUGACCCAGAAAGUGCGUAGCAAAGUAAUACAAAAUGUAACGGACCCAAAAAAU (((.(((((...(((((..((((.((....(((((((((...(.....)(((....))).)))))))))...)).))))..))..)))..(.....)....))))))))........... ( -25.10) >consensus CUGCUCACACAAAGCCGUGCUUUGUGAACACAGUUUAUUUUAGUCAAACGGCUGCUGUCUGCAAAAUUGACCCAGAAAAUGCACAGCGAAGUAAUAAAAAAUUUAGCGGACCCAAGAAAU (((((.......(((((((((..((((((...))))))...)))...))))))((((((((...........))).......))))).................)))))........... (-21.87 = -21.43 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:28:44 2006