| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,107,991 – 5,108,086 |
| Length | 95 |
| Max. P | 0.844777 |
| Location | 5,107,991 – 5,108,086 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 75.03 |
| Mean single sequence MFE | -25.46 |
| Consensus MFE | -15.41 |
| Energy contribution | -16.33 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.844777 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5107991 95 - 20766785 GUCAUCGAGGGUUCCAUGCGAUUCGAGAAUGUUCGAGUCAUGGAACCGAUUACCAUUGCGGUGGGUAGCCACAGAUAUAUUAUUCUAGG------ACAUAU (((...(((((((((((..((((((((....)))))))))))))))).............((((....))))..........)))...)------)).... ( -30.10) >DroSec_CAF1 14701 91 - 1 GUCAUCGAGGGUUUCAUGCGAUUCGAGAAUGUUCGAGUCAUGGAACCGAUAACCAUUGCGGUGGGU----------AUAUUAUUCUAGGAAUAUGACAUAU (((((....((((((((..((((((((....)))))))))))))))).(((.((((....)))).)----------))..............))))).... ( -26.10) >DroSim_CAF1 14762 91 - 1 GUCAUCGAGGGUUUCAUGAGAUUCGAGAAUGUUCGAGUCAUGGAACCGAUAACCAUUGCGGUGGGU----------AUAUUAUUCUAGGAUUAUGACAUAU (((((....((((((((((..((((((....)))))))))))))))).(((.((((....)))).)----------))..............))))).... ( -26.30) >DroEre_CAF1 14618 101 - 1 AUCAUCGAGGGUUCCGUGCGAUUCGAGAAUGUUCGAGUAAUGGAACCCAUAACCAUAGCGGUAAGUAACCACAGAUAUUUUAUUCUUGGAAAAUUGUAGAU ...(((..(((((((((...(((((((....))))))).)))))))))...(((.....)))......(((.(((........)))))).........))) ( -28.90) >DroYak_CAF1 14530 101 - 1 GUCAUCGAAGGUGCUGUUCGAUUCGAGAAUGUUCGCGUAAUGGAACCGAUUACCAUUGCGGUAAGCCACCACAUAUAUUUUAAUCUUGGAAAGUAAUAGUU ............(((((((..(((((((........(((((((.........)))))))(((.....))).............)))))))..).)))))). ( -21.10) >DroAna_CAF1 22460 93 - 1 GUCAUUGAGGGAUCCAAACGAUUCGAGAACGUGAGAGUCAUGGAACCAAUUACCAUUGCAGUAAGUAG----AAAAAUGACUUUCUUGGACA----CAUAU (((......(((((.....))))).....((.(((((((((........((((.......))))....----....))))))))).))))).----..... ( -20.29) >consensus GUCAUCGAGGGUUCCAUGCGAUUCGAGAAUGUUCGAGUCAUGGAACCGAUAACCAUUGCGGUAAGUA_____A_AUAUAUUAUUCUAGGAAAAU_ACAUAU .........((((((((..((((((((....))))))))))))))))....(((.....)))....................................... (-15.41 = -16.33 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:06 2006