| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,106,957 – 5,107,070 |
| Length | 113 |
| Max. P | 0.822955 |
| Location | 5,106,957 – 5,107,070 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 75.18 |
| Mean single sequence MFE | -43.23 |
| Consensus MFE | -23.25 |
| Energy contribution | -24.45 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.822955 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5106957 113 - 20766785 AAUAAAUUUGGUAGCUGUUGGUUGGAGACCGACAGGGACCAGACUUUCACAGCCCCGCAGAAGCUGGCUUCCCUGGACAGCCAGCAA-GGUCUCUGGCUAAGAGGGCAACUGAA ......((..((.(((.(((((..(((((((.(.(((....(.....)....))).))....(((((((((....)).)))))))..-))))))..)))..)).))).))..)) ( -44.70) >DroPse_CAF1 12373 113 - 1 GCACAUUUCGGGGGCAGCUGGCUGGAGGCCAGCGGCGACCAAAAUUUCACGGCUCCGCAAGUGCUGGCCGCGCUGGAGAGC-AGCAAGGGUGUGCAGCUCCAGGGAAAGCUGAA ((...(..(.(((((.((((((.....)))))).((((((.........(((((..((....)).))))).((((.....)-)))...))).))).))))).)..)..)).... ( -45.40) >DroSim_CAF1 13728 113 - 1 AAUAAAUUCGGUAGCUGUUGGUUGGAGACCGACAGGGACCAGACUUUCACAGCCCCCCAGCAGCUGGCUUCCCUGGACAGCCAGCAA-GGCCUCUGGCUAAGAGGGCAACUGAA .........(((..(((((((((...)))))))))..))).....((((..((((.......(((((((((....)).)))))))..-((((...))))....))))...)))) ( -43.70) >DroEre_CAF1 13584 113 - 1 AAUACAUUUGGUAGCUGCUGGUUGGAGACCGACGGGGACCAGAAUUUCACAGCCCCCCAGCAGCUGUCUUCCCUGGACAGCCAGCAA-GGCCUCUGGCUGAGAGGGCAACUCAA .........(..(((((((((((((...)))))((((....(.....)....)))).))))))))..)..((((...(((((((...-.....)))))))..))))........ ( -44.40) >DroYak_CAF1 13496 113 - 1 UAUAAAUUUGGUAGUUGUUGGUUGGAAAAUGAGGGCGACCAGAAUUUCACAGCCCCCCAGGAGCUGGCUUCUGUGGAUACCCAAAGA-GGCCUCUGGCUACAAGGGCAGCUCAA ..........(.(((((..(((((..((((..((....))...))))..))))).(((..((((((((((((.(((....))).)))-))))...)))).)..))))))))).. ( -39.00) >DroAna_CAF1 21424 113 - 1 GAUCGUUUCGGUCGCUGCUGGCUGGAAACCGAAGGCGAUCAGGCUUUCACGGUGCCGCAGCAGCUGGCCUCGUUGGAAAGUCGCCAA-GGCAUCUGGCUCAAGGGACAACUGAA ....((..((((((((((((.(.((..(((((((((......))))))..))).)))))))))).))))..((..((..(((.....-))).))..))....)..))....... ( -42.20) >consensus AAUAAAUUCGGUAGCUGCUGGUUGGAGACCGACGGCGACCAGAAUUUCACAGCCCCCCAGCAGCUGGCUUCCCUGGACAGCCAGCAA_GGCCUCUGGCUAAAAGGGCAACUGAA .........(((..(((((((((...)))))))))..)))...........((((.......(((((((((....)).)))))))...(((.....)))....))))....... (-23.25 = -24.45 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:05 2006