Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,102,246 – 5,102,363 |
Length | 117 |
Max. P | 0.822259 |
Location | 5,102,246 – 5,102,363 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 73.54 |
Mean single sequence MFE | -30.58 |
Consensus MFE | -14.36 |
Energy contribution | -14.96 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.25 |
Mean z-score | -1.90 |
Structure conservation index | 0.47 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.822259 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5102246 117 + 20766785 -UCUCAUCUGCAAUAUAAAUUGCGUUAUUUGUUUGUCCCUAUCGGCAGCAAGAUAGACGGGUAGUUUUACCGUAAAUUAGCGGUAUUAAGAAUUAUCGAUAUGUAAGGAUCCUUACA-U- -(((.(((((((((....)))))......((((.(((......))))))))))))))..((((((((((((((......))))))....))))))))...(((((((....))))))-)- ( -30.10) >DroSec_CAF1 8802 117 + 1 AUCUCAUCUGCAUUAUAAAUUGCGGUAUUUGUUUGGUCCUAUCGGCAUAACGAUAGUCGGGUAGU--UACCGUAAAGUAGCGGUAUUAGGAUUUAUGGAUAUGUGAGAAUCCUAAAC-UA .(((((((((((........)))))((((..(..((((((((((((.........))))).....--((((((......)))))).))))))).)..)))).)))))).........-.. ( -32.60) >DroSim_CAF1 8873 119 + 1 AUCUCAUCUGCAUUAUAAAUUGCGGUAUUUGUUUGGUCCUAUCGGCAGAACGAUAGUCGGGUAGUUUUACCGUGAAGUAGCGGUAUUAGGAAUUAUCGAUAUGUAAGGAUCCUAACC-UA .......(((((........))))).....(((.((((((((((......)))))(((((.((((((((((((......))))))....)))))))))))......)))))..))).-.. ( -30.80) >DroEre_CAF1 8750 104 + 1 ---------------CAAAAGGCGGUAUUUGUUUGGGCCUAUCGGCAGAGCGAUAGGCGAGUGCUUAUACCGUAAAGUAGUAGUAAACA-AAUUAUCGAUAUGUAGGGAUUCUAACAUUA ---------------.......(((((((((((((.((((((((......)))))))).(.(((((........))))).)..))))))-)).)))))..((((.((....)).)))).. ( -27.30) >DroYak_CAF1 8724 104 + 1 ---------------CCAAAGCCGGUAUUUGUUUGAGCCUAUCGGCAGCACGAUAGGCAAGUGGUUGUACCGUGUAGUGGUGGUACCAA-AAAUAUCGAUGUGUAAGAAUCCUAACAUUA ---------------.......((((((((......((((((((......))))))))...((((..(((((.....)))))..)))).-))))))))..((((.((....)).)))).. ( -32.10) >consensus _UCUCAUCUGCA_UAUAAAUUGCGGUAUUUGUUUGGGCCUAUCGGCAGAACGAUAGGCGGGUAGUUUUACCGUAAAGUAGCGGUAUUAAGAAUUAUCGAUAUGUAAGGAUCCUAACA_UA ...................((((((((.((..(((...((((((......)))))).)))..))...)))))))).....(((((........)))))...................... (-14.36 = -14.96 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:04 2006