Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,100,289 – 5,100,394 |
Length | 105 |
Max. P | 0.548886 |
Location | 5,100,289 – 5,100,394 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 83.58 |
Mean single sequence MFE | -31.80 |
Consensus MFE | -19.83 |
Energy contribution | -20.33 |
Covariance contribution | 0.51 |
Combinations/Pair | 1.29 |
Mean z-score | -2.40 |
Structure conservation index | 0.62 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.548886 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5100289 105 + 20766785 CAUUUGCUCCAC---CUGCCCAUCUAUCAGCCUGCUUGAUAGAGAGUAAUUGCCAUUACUCCACUUCCAAAGCUCCACCGCUCUGGGAGUACGAAGUAGAAUGGUCAU ....((..(((.---((((...((((((((.....))))))))(((((((....))))))).(((((((.(((......))).))))))).....))))..))).)). ( -30.50) >DroSec_CAF1 6842 105 + 1 CAUUUGCUCCAC---CUGCCCAUCCAUCAGCUUGCUCGAUAGGGAGUAAUUGUCAUUACUCCACUUCCAAAGCUCCACCGCUCUGGGAGUACGAAGUAGAAUGGUCAU .....((.....---..))......((((..(((((((....((((((((....))))))))(((((((.(((......))).))))))).)).)))))..))))... ( -30.30) >DroSim_CAF1 6822 105 + 1 CAUUUGCUCCAC---CUGCCCAUCCAUCAGCCUGCUCGAUAGGGAGUAAUUGCCAUUACUCCACUUCCAAAGCUCCACCGCUCUGGGAGUACGAAGUAGAAUGGUCAU .....((.....---..))......((((..(((((((....((((((((....))))))))(((((((.(((......))).))))))).)).)))))..))))... ( -32.60) >DroEre_CAF1 6750 105 + 1 CAUUUGCUCCAC---CUGCCCAUCCAUCAGUCUGCUCGAUAGGGAGUAAUUGCCAUUACUCCAUUUCCAUAGCUCCACCGCUCUGGCGGAACUAACUAGAAUGGGCAU ............---.(((((((.(........(((.((...((((((((....))))))))...))...)))....((((....)))).........).))))))). ( -31.20) >DroYak_CAF1 6729 105 + 1 CAUUUGCUCCAC---CUGCCCAUCCAUCAGCCUGCUCGAUAGGGAGUAGUCGCCGCUACUCCAUUUCCAAAGCUCCACCGCUCUGGGAGAACUAACUAGAAUGGGCAU ............---.(((((((.(.((((....)).))(((((((((((....)))))))).((((((.(((......))).))))))..)))....).))))))). ( -34.20) >DroAna_CAF1 12608 108 + 1 CAGUUGCUCGACUUGCUGCCCGUGAAACAGGUUUUGGGCUAACGUAUAGCUACCAUUGAUCCACUUCCAAAGCUCCACAGCUCGGGAGGUCCUCAGCAGAAGGGGCAU ....(((((..(((.((((..........(((....(((((.....))))))))..(((...((((((..((((....))))..))))))..))))))))))))))). ( -32.00) >consensus CAUUUGCUCCAC___CUGCCCAUCCAUCAGCCUGCUCGAUAGGGAGUAAUUGCCAUUACUCCACUUCCAAAGCUCCACCGCUCUGGGAGUACGAAGUAGAAUGGGCAU ................((.((((...................((((((((....))))))))(((((((.(((......))).)))))))..........)))).)). (-19.83 = -20.33 + 0.51)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:03 2006