Locus 1314

Sequence ID 2R_DroMel_CAF1
Location 5,094,762 – 5,094,881
Length 119
Max. P 0.534074
window2280

overview

Window 0

Location 5,094,762 – 5,094,881
Length 119
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 79.89
Mean single sequence MFE -36.15
Consensus MFE -22.80
Energy contribution -24.38
Covariance contribution 1.59
Combinations/Pair 1.29
Mean z-score -1.41
Structure conservation index 0.63
SVM decision value 0.00
SVM RNA-class probability 0.534074
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5094762 119 + 20766785
UCUUCAAUGCUGGCUGGCAAUGAGUGGAACUGAUCGUAGAAAUCGGUGUGCUCUUUCAGGUAAAGUUGAAGGAGAUUGGCACAGAGGAUGUGGUAAUUUAACUCCUCAUCGAUAGCCUG
...........(((((.(.(((((..(.((((((.......))))))...(((((((((......)))))))))((((.((((.....)))).))))....)..))))).).))))).. ( -34.00)
>DroSec_CAF1 1178 119 + 1
UCUUCAAUGCUGGCUGGCAAUGAGUGGAACUGAUCAUAGAAAUCGGUGUGCUCUUUCAGGUAAAGUUGAAGGAGGUUGACACAGAGGAUGUGGUAAUUAACCUCUUCAUUGUUAGCCUG
...........(((((((((((((((..((((((.......))))))...(((((((((......))))))))).....)))(((((.((.......)).))))))))))))))))).. ( -40.40)
>DroSim_CAF1 1137 119 + 1
UCUUCAAUGCUGGCUGGCAAUGAGUGGAACUGAUCAUAGAAAUCGGUGUGCUCUUUCAGGUAAAGUUGAAGGAGGUUGACACAGAGGAUGUGGUAAUUAACCUCUUCAUUGUUAGCCUG
...........(((((((((((((((..((((((.......))))))...(((((((((......))))))))).....)))(((((.((.......)).))))))))))))))))).. ( -40.40)
>DroEre_CAF1 1151 119 + 1
UCUUCAGUGCUGGCCGACAUUGAGCGGAACUGAUCGAAGAAAUCGGUGUGCCCUUUCAGAUAAAGUUGAAGAAAGUUGGCACAGAGGAUGUGGUAAGUUAACUCCGCCUUGGAAGCCUG
....(((.(((..((((....(.((((((((.((((.....(((..(((((((((((.............)))))..))))))...))).)))).)))....)))))))))).)))))) ( -31.92)
>DroYak_CAF1 1143 119 + 1
UCUUCAGUGCUGGCUGACAAUGAGCCGAACUGAUCGAAGAAAUCAGUGUGUCCUUUCAGAUAAAGUUGAAGGAAGUUGGCACAGAGGAUAUGGUAAGUUAACUCGGCCUUGGAAGCCUG
(((((.((((..(((((((.........((((((.......)))))).))))(((((((......))))))).)))..)))).)))))................(((.......))).. ( -33.50)
>DroAna_CAF1 997 119 + 1
UCUUCCGAACCGGCAGCUGUUACUUUGAACAGAUCAAAGUAAUCUGUGUGCUUUUCCAGGUAGGUCUGAAGCAGAUUCGCACAGAGCAUGUGGUAGACCAAUUCAGGGCGUGGAGCCUG
..(((((..((.((((..((((((((((.....)))))))))))))).((((......))))((((((..(((..(((.....)))..)))..)))))).......))..))))).... ( -36.70)
>consensus
UCUUCAAUGCUGGCUGGCAAUGAGUGGAACUGAUCAAAGAAAUCGGUGUGCUCUUUCAGGUAAAGUUGAAGGAGGUUGGCACAGAGGAUGUGGUAAUUUAACUCCGCAUUGGUAGCCUG
...........((((..((((((..(((((((((.......))))))...(((((((((......))))))))).(((.((((.....)))).)))......)))))))))..)))).. (-22.80 = -24.38 +   1.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:58 2006