Locus 1313

Sequence ID 2R_DroMel_CAF1
Location 5,089,726 – 5,089,816
Length 90
Max. P 0.735226
window2279

overview

Window 9

Location 5,089,726 – 5,089,816
Length 90
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 84.46
Mean single sequence MFE -24.10
Consensus MFE -19.14
Energy contribution -18.92
Covariance contribution -0.22
Combinations/Pair 1.05
Mean z-score -2.06
Structure conservation index 0.79
SVM decision value 0.43
SVM RNA-class probability 0.735226
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5089726 90 + 20766785
GCUCACAAAACGCGCAACGCCGUGCAGAGAAAUUUUUUCAGCUGCCU-UUACCAAAAAACUGUAAUGGCGUCGGCAAAAAUGCACGAGCGA
((((.......(((...))).(((((((((.....)))).((((((.-((((.........)))).)))...))).....))))))))).. ( -25.00)
>DroPse_CAF1 28629 89 + 1
GGGAAGAAAUCGCACAACGCUGUGCAGAGAAAUUUUUUCUGCCUACU-CCAC-AAAAAACUGUAAUGGCGUCGGCAAAAAUGCACGAGCGA
(.((.....)).)....(((((((((((((.....))))((((.((.-((((-(......)))...)).)).))))....))))).)))). ( -23.80)
>DroEre_CAF1 20137 89 + 1
GCUCACAAAACGCGCAACGCCGUGCAGUUAAAUUUUUUCAGCUGCCU-UUACCAA-AAACUGUAAUGGCGUCGGCAAAAAUGCACGAGCGA
((((........((..(((((((((((((.((....)).))))))..-.(((...-.....))))))))))))(((....)))..)))).. ( -24.90)
>DroYak_CAF1 18612 89 + 1
GCUCACAAAACGCGCAACGCCGUGCAGAGAAAUUUUUUCAGUUGCCU-UUACCAA-AAACUGUAAUGGCGUCGGCAAAAAUGCACGAGCGA
((((.......(((...))).(((((((((.....)))).(.((((.-((((...-.....)))).)))).)........))))))))).. ( -24.30)
>DroAna_CAF1 19052 77 + 1
UGGAACAAUUCGCGCAACGCCGUGCAGAGAAAUUUUUUCU--------------CAAAACUGUAAUGGCGUCGGCAAAAAUGCACGAGCGA
.........((((....((((((((((((((.....))))--------------).....))).))))))((((((....))).))))))) ( -23.00)
>DroPer_CAF1 28620 90 + 1
GGGAAGAAAUCGCACAACGCUGUGCAGAGAAAUUUUUUCUGCCUACUUCCAC-AAAAAACUGUAAUGGCGUCGGCAAAAAUGCACGAGCGA
.(((((.....(((((....)))))(((((.....))))).....)))))..-..............((.((((((....))).))))).. ( -23.60)
>consensus
GCGAACAAAACGCGCAACGCCGUGCAGAGAAAUUUUUUCAGCUGCCU_UUAC_AAAAAACUGUAAUGGCGUCGGCAAAAAUGCACGAGCGA
..........(((....((((((((((................................)))).))))))((((((....))).)))))). (-19.14 = -18.92 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:57 2006