Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,073,154 – 5,073,256 |
Length | 102 |
Max. P | 0.985086 |
Location | 5,073,154 – 5,073,256 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 79.03 |
Mean single sequence MFE | -22.40 |
Consensus MFE | -11.95 |
Energy contribution | -12.23 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.17 |
Mean z-score | -2.67 |
Structure conservation index | 0.53 |
SVM decision value | 2.00 |
SVM RNA-class probability | 0.985086 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5073154 102 - 20766785 UGUCCAUUAACCGAUUGCGUAUACUACGACCU----ACGUAAUCAAUCUGAAGCCGGGGCAAUCCUGUUUGCCUCAACUUUUAAACAUUGCUAACUUAUUGCACUC ............(((((((((..........)----)))))))).....((((..(((((((......)))))))..)))).......(((.........)))... ( -22.50) >DroSec_CAF1 1742 98 - 1 UGUCCAUUAACCGAUUGCGUAUACC---ACCU----ACGUAAUCAAUCUGAAGCCG-GGCAAUCCUUUUUGCCUCAACUUUUAAACGUUGUUAACUUAUGGCACUU ............(((((((((....---...)----))))))))........((((-(((((......))))))((((........)))).........))).... ( -25.00) >DroSim_CAF1 1743 98 - 1 UGUCCAUUAACCGAUUGCGUAUUCC---ACCU----ACGUAAUCAAUCUGAAGCCG-GGCAAUCCUUUUUGCCUCAACUUUUAAACGUUGUUAACUUAUGGCACUU ............(((((((((....---...)----))))))))........((((-(((((......))))))((((........)))).........))).... ( -25.00) >DroEre_CAF1 3621 89 - 1 ------GUAACCGAUUGCGUAUACG---ACCUAGAUACGUAAUCAAUCUGAAGCCG-GACAAUCCUGUUUCCCUCAAUCUUUGAACAUUGUUAACUAAC------- ------.((((.((((((((((.(.---.....))))))))))).....(((((.(-(.....)).)))))..................))))......------- ( -20.00) >DroYak_CAF1 1718 89 - 1 ------AUAACCGAUUGCGUAUACG---ACCUAGAUACGUAAUCAAUCUGAAGCCG-GGCAAUCCUGUUUCCCUCAACUUUCAAGCUUAGUUAUUUGAU------- ------(((((.((((((((((.(.---.....))))))))))).....(((((.(-(.....)).)))))..................))))).....------- ( -19.50) >consensus UGUCCAUUAACCGAUUGCGUAUACC___ACCU____ACGUAAUCAAUCUGAAGCCG_GGCAAUCCUGUUUGCCUCAACUUUUAAACAUUGUUAACUUAU_GCACU_ ......(((((.((((((((................))))))))....(((((....(((((......))))).....)))))......)))))............ (-11.95 = -12.23 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:55 2006