Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,071,515 – 5,071,619 |
Length | 104 |
Max. P | 0.528491 |
Location | 5,071,515 – 5,071,619 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 81.30 |
Mean single sequence MFE | -38.87 |
Consensus MFE | -25.57 |
Energy contribution | -26.43 |
Covariance contribution | 0.86 |
Combinations/Pair | 1.18 |
Mean z-score | -1.42 |
Structure conservation index | 0.66 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.528491 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5071515 104 + 20766785 UCGUGGCUUC-ACCU----------CUUGUGGCUGGUGUUCAAUUUCGUUAACCUGGCGCACUGCUGCCAGGCGGAGUUCGUCUUCGGCUGGAGUCACUUGCGCACCAGUCCCGU ..(((....)-))..----------...(.(((((((((.(((.........((((((((...)).))))))..((.((((.(....).)))).))..))).))))))))).).. ( -36.20) >DroGri_CAF1 99 112 + 1 ---UGGCUCCAACCUUUUGGAGCAUGACGUGGCUGGUCUUCAACUUUGUGAAUCUGGCACACUGCUGCCAGGCCGAGUUCAGCUUUGGCUGGCAUUACAUUCGCAGCAGUCCGGU ---..(((((((....)))))))..((((((((..(..((((......)))).)..)).)))((((((..(((((((......)))))))(......)....))))))))).... ( -40.10) >DroSec_CAF1 106 104 + 1 UCGUGGCUAC-ACCU----------CUUGUGGCUGGCGUUCAAUUUCGUGAACCUGGCGCACUGCUGCCAGGCGGAGUUCGUCUUCGGCUGGAGUCACUUGCGCACCAGUCCCGU ..(((....)-))..----------...(.((((((.(((((......)))))...(((((..(((.((((.(((((.....))))).)))))))....))))).)))))).).. ( -39.40) >DroEre_CAF1 2014 104 + 1 UCGUGGCUUC-AUCU----------CUCGUGGCUGGUGUUCAAUUUCGUGAACCUGGCGCACUGCUGCCAGGCGGAGUUCGUCUUCGGCUGGCUUCACUUGCGCACCAGUCCCGU ..........-....----------..((.((((((((((((......)))))...(((((.((..(((((.(((((.....))))).)))))..))..)))))))))))).)). ( -42.80) >DroYak_CAF1 85 104 + 1 UCGUGGCUUC-AGCU----------CUCAUGGUUGGUGUUCAAUUUCGUGAACCUGGCGCACUGCUGCCAGGCGGAGUUCGUCUUUGGCUGGAUUCACUUGCGCACCAGUCCCGU ..(.(((...-.)))----------..)..((((((((((((......)))))...(((((.((...((((.(((((.....))))).))))...))..)))))))))).))... ( -33.00) >DroAna_CAF1 107 104 + 1 UCCUGGUUCC-AGUU----------GGCCUGGUUGGUGUUCAACUUUGUCAACCUGGCCCACUGCUGUCAGGCGGAGUUUGACUUUGGUUGGAGCCAUCUCCGCACCAGUCCCGU ..(((((..(-(((.----------((((.(((((..(........)..))))).)))).)))).......((((((..((.((((....)))).)).)))))))))))...... ( -41.70) >consensus UCGUGGCUUC_ACCU__________CUCGUGGCUGGUGUUCAAUUUCGUGAACCUGGCGCACUGCUGCCAGGCGGAGUUCGUCUUCGGCUGGAGUCACUUGCGCACCAGUCCCGU ..............................((((((((((((......)))))...(((((.((...((((.(((((.....))))).))))...))..)))))))))).))... (-25.57 = -26.43 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:54 2006