Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,390,492 – 1,390,612 |
Length | 120 |
Max. P | 0.586993 |
Location | 1,390,492 – 1,390,612 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.26 |
Mean single sequence MFE | -25.03 |
Consensus MFE | -22.27 |
Energy contribution | -21.50 |
Covariance contribution | -0.77 |
Combinations/Pair | 1.15 |
Mean z-score | -1.78 |
Structure conservation index | 0.89 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.586993 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1390492 120 - 20766785 AAUUGGUUUGUAGUGGUUUAUGCUUGAUAUACAAAUAUAUUUUGUAUCCGGCCGCUUAAACAAAAAGUAGGUAGAGUAAAUUUACCUCAAGACUUUGAUAAGCAAAUUUUGUAUUAUUCU ..((((((((.(((((((.((((..((((((....))))))..))))..))))))))))))..((((((((((((.....)))))))....)))))......)))............... ( -26.50) >DroSec_CAF1 17523 116 - 1 AAUUUGUUUGAAGCGGUUUAUGCUUGAUACACAAA----UUUUGUAUCCGACCGCUUAAACAAAAAGUAGGUAAAGUAAAUUUACUUCAAGACUUUGAUAAGCUAAUUUUGUAUUAUUCU ...((((((((.((((((.((((..(((......)----))..))))..))))))))))))))((((((((((((.....)))))))....)))))........................ ( -24.30) >DroSim_CAF1 22285 116 - 1 AAUUUGUUUGAAGCGGUUUAUGCUUGAUACACAAA----UUUUGUAUCCGACCGCUUAAACAAAAAGUAGGUAAAGUAAAUUUACUUCAAGACUUUGAUAAGCUAAUUUUGUAUUAUUCU ...((((((((.((((((.((((..(((......)----))..))))..))))))))))))))((((((((((((.....)))))))....)))))........................ ( -24.30) >consensus AAUUUGUUUGAAGCGGUUUAUGCUUGAUACACAAA____UUUUGUAUCCGACCGCUUAAACAAAAAGUAGGUAAAGUAAAUUUACUUCAAGACUUUGAUAAGCUAAUUUUGUAUUAUUCU ...(((((((.(((((((.......((((((.((.....)).)))))).))))))))))))))((((((((((((.....)))))))....)))))........................ (-22.27 = -21.50 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:28:41 2006