Locus 1309

Sequence ID 2R_DroMel_CAF1
Location 5,070,243 – 5,070,337
Length 94
Max. P 0.632784
window2275

overview

Window 5

Location 5,070,243 – 5,070,337
Length 94
Sequences 4
Columns 96
Reading direction reverse
Mean pairwise identity 87.50
Mean single sequence MFE -34.50
Consensus MFE -26.07
Energy contribution -26.63
Covariance contribution 0.56
Combinations/Pair 1.04
Mean z-score -1.57
Structure conservation index 0.76
SVM decision value 0.20
SVM RNA-class probability 0.632784
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5070243 94 - 20766785
G--AAGACGAAACCGGGGGUGGGUUUGGUCUUAGAGCUUCGUUCUCCGAGCGUGAAAACAUCCACCCCUAAGGCUGAUAUCAUCGCGCCACCCACC
.--...........((((((((((((((....(((((...)))))))))))((....))..))))))))..(((((((...)))).)))....... ( -32.60)
>DroSec_CAF1 13022 96 - 1
GUGUGGACGAGCCCGGGGGUGGGUUUGGUCUUAGAGCUUCGUUCUCCGAGCGGAAAAACAUCCACCCCUAAGGCUGAUAUCAUCGCGCCACCCAGC
(.((((.((((((.((((((((((((((....(((((...)))))))))))(......)..))))))))..))))(((...))).)))))).)... ( -36.80)
>DroSim_CAF1 13165 96 - 1
GUGUGGACGAGCCCGGGGGUGGGUUUGGUCUUAGAGCUUCGUUCUCGGAGCGGAAAAACAUCCACCCCUAAGGCUGAUAUCAUCGCGCCACCCAGC
(.((((.((((((.((((((((((((..(((....((((((....)))))))))..)).))))))))))..))))(((...))).)))))).)... ( -39.80)
>DroYak_CAF1 343 88 - 1
GUG--GA-----AUGAGGGUGGGUUUGGUCUCAGAGCUUCGUUCUCCGAGCGGAAAAACAUCCA-CCCCAAGGCUGAUAUCAUAGCACCACCCACC
(((--(.-----.((.((((((((((((....(((((...)))))))))))(......)..)))-)))))..((((......)))).))))..... ( -28.80)
>consensus
GUGUGGACGAGCCCGGGGGUGGGUUUGGUCUUAGAGCUUCGUUCUCCGAGCGGAAAAACAUCCACCCCUAAGGCUGAUAUCAUCGCGCCACCCACC
................(((((((((..(((((((.((((........))))(((......)))....)))))))..).......)).))))))... (-26.07 = -26.63 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:53 2006