Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,070,132 – 5,070,226 |
Length | 94 |
Max. P | 0.576714 |
Location | 5,070,132 – 5,070,226 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 96.62 |
Mean single sequence MFE | -35.06 |
Consensus MFE | -31.12 |
Energy contribution | -31.72 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.25 |
Structure conservation index | 0.89 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.576714 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5070132 94 + 20766785 AGGCGAUGGCC-GGGUGGCUCAGCAGGGUGUGUCGGGGUCACCUUUGUUGCCGUUUUUUCGGGGGUGGUUAACCAUAAAACGAGGCGCCGAAAUU .(((((((((.-(((((((((.((.....))....))))))))).....)))))..(((((...((((....))))....)))))))))...... ( -34.70) >DroSec_CAF1 12910 95 + 1 AGGCGCUGGCCUGGGUGGCUCAGCAGGGUGUGUCGGGGUCACCUUUGUUGCCGUUUUUUCGGGGGUGGUUAACCAUAAAACGAGGCGCCGAAAUU .(((((((((..(((((((((.((.....))....))))))))).....)))......(((...((((....))))....)))))))))...... ( -38.50) >DroSim_CAF1 13051 95 + 1 AGGCGCUGGCCUGGGUGGCUCAGCAGGGUGUGUCGGGGUCACCUUUGUUGCCGUUUUUUCGGGGGUGGUUAACCAUAAAACGAGGCGCCGAAAUU .(((((((((..(((((((((.((.....))....))))))))).....)))......(((...((((....))))....)))))))))...... ( -38.50) >DroEre_CAF1 13162 94 + 1 AGGAGAUGGCC-GGGUGGCUCAGCACGGUGUGUCGGGGUCACCUUUGUUGCCGUUUUUUCGGGGGUGGUUAACCAUAAAACGAGGCGCCGAAAUU ..((((((((.-(((((((((.((((...))))..))))))))).....))))))))(((((.(((((....)))).........).)))))... ( -33.00) >DroYak_CAF1 234 92 + 1 AGGAGAUGGCC-GGGUGGCUCAGCACGGU--GUCGGGGUCACCUUUGUUGCCGUUUUUUCGGGGGUGGUUAACCAUAAAACGAGGCGCCGAAAUU ..((((((((.-(((((((((.((.....--))..))))))))).....))))))))(((((.(((((....)))).........).)))))... ( -30.60) >consensus AGGCGAUGGCC_GGGUGGCUCAGCAGGGUGUGUCGGGGUCACCUUUGUUGCCGUUUUUUCGGGGGUGGUUAACCAUAAAACGAGGCGCCGAAAUU .((((.((((..(((((((((.(((.....)))..))))))))).....))))...(((((...((((....))))....)))))))))...... (-31.12 = -31.72 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:52 2006