Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,069,843 – 5,069,935 |
Length | 92 |
Max. P | 0.681629 |
Location | 5,069,843 – 5,069,935 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 94.90 |
Mean single sequence MFE | -22.98 |
Consensus MFE | -21.12 |
Energy contribution | -22.12 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.55 |
Structure conservation index | 0.92 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.681629 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5069843 92 - 20766785 AA-AAAACAGUUGCAGAACCCGAAUAAAAAAAACCCGUUUGCCCACCAACACAGAAGACCCGCUGGUUGGCCCACAUUCGCCUUGUGUCGCUG ..-....((((.(((.((..(((((.....(((....))).....(((((.(((........)))))))).....)))))..)).))).)))) ( -19.50) >DroSec_CAF1 12635 90 - 1 AA-AAAACAGUUGCAGAACCCGAAUGAA--AAACCCGUUUGCCCACCAACACAGAAGACACGCUGGUUGGCCCACAUUCGCGUUGUGUCGCUG ..-....((((.(((.(((.((((((..--(((....))).....(((((.(((........))))))))....)))))).))).))).)))) ( -26.00) >DroSim_CAF1 12775 91 - 1 AAAAAAACAGUUGCAGAACCCGAAUGAA--AAACCCGUUUGCCCACCAACACAGAAGACACGCUGGUUGGCCCACAUUCGCGUUGUGUCGCUG .......((((.(((.(((.((((((..--(((....))).....(((((.(((........))))))))....)))))).))).))).)))) ( -26.00) >DroEre_CAF1 12899 89 - 1 A--AAAACAGUUGCAGAACCCGAAUGAA--AAACCCGUUUUCCCACCAACACAGAAGACACGCUGGUUGGCCCACAUUCGCCUUGCGUCGCUG .--....(((((((((....((((((.(--(((....))))....(((((.(((........))))))))....))))))..)))))..)))) ( -20.40) >consensus AA_AAAACAGUUGCAGAACCCGAAUGAA__AAACCCGUUUGCCCACCAACACAGAAGACACGCUGGUUGGCCCACAUUCGCCUUGUGUCGCUG .......((((.(((.(((.((((((....(((....))).....(((((.(((........))))))))....)))))).))).))).)))) (-21.12 = -22.12 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:51 2006