Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,063,541 – 5,063,644 |
Length | 103 |
Max. P | 0.639047 |
Location | 5,063,541 – 5,063,644 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 84.59 |
Mean single sequence MFE | -26.30 |
Consensus MFE | -13.67 |
Energy contribution | -15.39 |
Covariance contribution | 1.72 |
Combinations/Pair | 1.10 |
Mean z-score | -2.72 |
Structure conservation index | 0.52 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.639047 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5063541 103 + 20766785 AAAAGACAGGAGAUUUUCUCGUAUUUU--UUCGGUUUCUGUUUUGCGGUUAAGUAAACGUAAACAGAGACGAAAAUUAAAAGAAAUCACAUGCAACGCACGUCUG ...((((....(((((.((..((..((--((((.(((((((((.(((..........)))))))))))))))))).))..)))))))...(((...))).)))). ( -26.50) >DroVir_CAF1 7659 91 + 1 AAA-------UGAUUUCUUUGUCUCUGUAUUUGG---CCAGUUUGUGGUUA----AACGUAAACAUGGCCGAAAACCAAAUGAAAUCACAUGCAACACACGUUUC ...-------(((((((((((.....((.(((((---((((((((((....----..))))))).)))))))).)))))).)))))))................. ( -24.90) >DroSec_CAF1 6360 103 + 1 AAAAGACAGGAGAUUUUCUCGUAUUUU--UUCGGUUUCUGUUUUGCGGUUAAGUAAACGUAAACAGAGACGAAAAUUAAAAGAAAUCACAUGCAACGCACGUCUG ...((((....(((((.((..((..((--((((.(((((((((.(((..........)))))))))))))))))).))..)))))))...(((...))).)))). ( -26.50) >DroSim_CAF1 6490 103 + 1 AAAAGACAGGAGAUUUUCUCGUAUUUU--UUCGGUUUCUGUUUUGCGGUUAAGUAAACGUAAACAGAGACGAAAAUUAAAAGAAAUCACAUGCAACGCACGUCUG ...((((....(((((.((..((..((--((((.(((((((((.(((..........)))))))))))))))))).))..)))))))...(((...))).)))). ( -26.50) >DroEre_CAF1 6510 102 + 1 AAAAGACAGGAGAUUUUCUGGUCU-UU--UUCGGUUUCUGUUUUGCGGUUAAGUAAACGUAAACAGAGACGAAAAUUAAAAGAAAUCAUAUGCAACGCACGUCUG ...((((....(((((.((..(..-((--((((.(((((((((.(((..........))))))))))))))))))..)..)))))))...(((...))).)))). ( -27.10) >consensus AAAAGACAGGAGAUUUUCUCGUAUUUU__UUCGGUUUCUGUUUUGCGGUUAAGUAAACGUAAACAGAGACGAAAAUUAAAAGAAAUCACAUGCAACGCACGUCUG ...((((....((((((............((((.((((((.((((((..........))))))))))))))))........))))))...(((...))).)))). (-13.67 = -15.39 + 1.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:42 2006