Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,390,020 – 1,390,124 |
Length | 104 |
Max. P | 0.593153 |
Location | 1,390,020 – 1,390,124 |
---|---|
Length | 104 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.48 |
Mean single sequence MFE | -37.23 |
Consensus MFE | -29.65 |
Energy contribution | -29.29 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.07 |
Mean z-score | -1.85 |
Structure conservation index | 0.80 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.593153 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1390020 104 - 20766785 GACCGGGGGCAUCAGACAGCGACAAAAGCAACAGUCGGCAGUAG--------UCUGGUGGUCUGGUGGACUGGACCGGACCAAAC--------UCGGGGAAAAAAGAAAAUGGAGACUAG ..(((((...(((((((.(((((..........))).))....)--------))))))((((((((.......))))))))...)--------))))..............(....)... ( -33.20) >DroSec_CAF1 17022 120 - 1 AGCCGGGGGCAUCAGACAGCGACAAAAGCAACAGUCGGCAGUGGUCCGGUGGUCUGGUGGUCUGGUGGACUGGACCGGACCAAACGGACGGAGCCGGGGAAAAAAGAAAAUGGAGACUAG .(((...))).((.....((.......)).....(((((..(.(((((.(((((((((((((.....))))..)))))))))..))))).).)))))........))....(....)... ( -41.40) >DroSim_CAF1 21777 111 - 1 AACCGGGGGCAUCAGACAGCGACAAAAGCAACAGUCGGCAGUGGUCCGGUGGUCUGGUGGUCUGGUGGACUGGACCGGACC---------GAGCCGGGGAAAAAAGAAAAUGGAGACUAG ..((((....(((((((.((.......))..((.(((((....).)))))))))))))((((((((.......))))))))---------...))))..............(....)... ( -37.10) >consensus AACCGGGGGCAUCAGACAGCGACAAAAGCAACAGUCGGCAGUGGUCCGGUGGUCUGGUGGUCUGGUGGACUGGACCGGACCAAAC_____GAGCCGGGGAAAAAAGAAAAUGGAGACUAG ..((((...((((((((..((((..........)))).((.(((.(.....).))).))))))))))..)))).((((...............))))..............(....)... (-29.65 = -29.29 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:28:36 2006