| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 1,004,012 – 1,004,131 |
| Length | 119 |
| Max. P | 0.756868 |
| Location | 1,004,012 – 1,004,131 |
|---|---|
| Length | 119 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.71 |
| Mean single sequence MFE | -29.45 |
| Consensus MFE | -17.35 |
| Energy contribution | -17.10 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.756868 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1004012 119 + 20766785 AACCUGUAGAGAGAUUUCUGUUACUGCAAGUUUUAUAAAACUUGUUUAGAGUUCACUUACUCCAGGCUUUCUUAGCAAGUUU-UUGCUUGAGGCCAAGCUUAAACUGUAAAUUGGCCGUA ...(((.((((((...((((.....((((((((....))))))))...((((......)))))))))))))))))(((((..-..))))).((((((..(((.....))).))))))... ( -31.10) >DroSim_CAF1 46207 119 + 1 AACCUGUGGAGAGUUUUCUGUUACUGCAAGUUUGAUAAAACUUGUUUAGAGUUCACUUACUCCAGGCUUUCUUAGCAAGUUU-UUGUUUGAGGCCAAGAUUAAACUGUAAAUUGGCCGUA ..((((..(.((((.(((((.....((((((((....)))))))).)))))...)))).)..))))...((..(((((....-))))).))((((((.((......))...))))))... ( -31.60) >DroEre_CAF1 20296 120 + 1 AAACUGUACGGAGUUUUCUGUUUAUGCAAGUUUGAUACAACUUGUUUGAAGUUCAAUUAGGUUUGGCUUUCUAAGCAAGUUUUUUGUUUGAGGCUAAGAUUGAACUGUAAGUUGGCCGUA ......(((((..........(((.(((((((......))))))).)))(((((((((....((((((((..(((((((...)))))))))))))))))))))))).........))))) ( -30.00) >DroYak_CAF1 25039 95 + 1 AAACUUUACAGACUGUUCC------GCAGGUUUGAUACAACUUGU------------------UGGCUUUCUCUGCAAGUUU-UUGCUCGAGGCCAAGAUUAAACUGUAUGUUGGCCGUA ((((((..((((..(..((------(((((((......)))))).------------------)))..)..)))).))))))-........((((((.((........)).))))))... ( -25.10) >consensus AAACUGUACAGAGUUUUCUGUUACUGCAAGUUUGAUAAAACUUGUUUAGAGUUCACUUACUCCAGGCUUUCUUAGCAAGUUU_UUGCUUGAGGCCAAGAUUAAACUGUAAAUUGGCCGUA ......(((((..............(((((((......)))))))...................((((((...(((((.....))))).)))))).........)))))........... (-17.35 = -17.10 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:25 2006