Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,057,661 – 5,057,775 |
Length | 114 |
Max. P | 0.555074 |
Location | 5,057,661 – 5,057,775 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 88.02 |
Mean single sequence MFE | -37.48 |
Consensus MFE | -26.50 |
Energy contribution | -27.75 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.09 |
Mean z-score | -1.54 |
Structure conservation index | 0.71 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.555074 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5057661 114 + 20766785 GCUUCAGGC---UUCCUAGUUUGCUGCAUCGGCAUCAGCUCCUGUUUGACCAUCAUUAUGUCGUCGGUUAUCUGCGCAGGCGGAUGGACCAAAGGCAAUGGAAAGGGAACUGACAUU ((..(((((---(....))))))..)).......((((.((((......((((.....((((...((((((((((....)))))).))))...))))))))...)))).)))).... ( -35.00) >DroSec_CAF1 494 114 + 1 GCUUCAGAC---GUCCUAGUUUGCUGCAUUGGCAUUAGCUCCUGUUUGACCAUCAUUAUGUCGUUGGUUAUCUCCGCAGGCGGAUGAACCAACGGCAAUGGAAACGGAACUGGCAUU ((..(((((---......)))))..))....((..(((.(((.((((..((((.....(((((((((((...((((....))))..)))))))))))))))))))))).)))))... ( -40.50) >DroSim_CAF1 494 114 + 1 GCUUCAGAC---GUCCUAGUUUGCUGCAUUGGCAUCAGCUCCUGUUUGACCAUCAUUAUGUCGUUGGUUAUCUCCGCAGGCGGAUGAACCAAGGGCAAUGGAAACGGAACUGGCAUU ((..(((((---......)))))..))....((..(((.(((.((((..((((.....((((.((((((...((((....))))..)))))).))))))))))))))).)))))... ( -38.50) >DroEre_CAF1 494 117 + 1 ACUUCCGGUUCUUUCCUUAGUUGCUGUAUCGGCAUCAGCUCCUGUUUGACCAUCAUCAUGUCGUUGGCUAUCUGCACAGGCGGAUGAACCAAGGGCAUUGGAAACGGAACUGUCAUA .....(((((((((((.(((..((((.........))))..))).............(((((.((((.(((((((....)))))))..)))).))))).))))..)))))))..... ( -35.90) >consensus GCUUCAGAC___GUCCUAGUUUGCUGCAUCGGCAUCAGCUCCUGUUUGACCAUCAUUAUGUCGUUGGUUAUCUCCGCAGGCGGAUGAACCAAGGGCAAUGGAAACGGAACUGGCAUU .....................((((.....))))((((.(((.((((..((((.....((((.((((((((((((....)))))).)))))).))))))))))))))).)))).... (-26.50 = -27.75 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:34 2006