Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,056,198 – 5,056,309 |
Length | 111 |
Max. P | 0.652146 |
Location | 5,056,198 – 5,056,309 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 88.54 |
Mean single sequence MFE | -28.92 |
Consensus MFE | -22.08 |
Energy contribution | -21.95 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.21 |
Mean z-score | -1.62 |
Structure conservation index | 0.76 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.652146 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5056198 111 + 20766785 UGGCUGGCGGAAUCGAACAAUGCUGAAAAUGUAGAAGGCGAGAAUGCAAAAAAUCGCCACCCCCAUGUAGGUGGUGGCUAAAAUGUUAAACGGAGCCCCAAAAGGCAAUUA ...((((((...(((.....(((.......))).....)))...)))........((((((.((.....)).))))))............))).(((......)))..... ( -29.40) >DroSec_CAF1 10701 110 + 1 UGGCUG-CGGAAUCGAACAAUGCUGAAAAUGUAAAAUGCGAGAAUGCAAAAAAUUGCCGCCCCCUUGUAGGUGGUGGCUAAAAUGUUAAACGGAGCCCCAAAAGGCAAUUA ....((-((...(((.....(((.......))).....)))...))))...((((((((((........)))((.((((....((.....)).))))))....))))))). ( -28.10) >DroSim_CAF1 7728 110 + 1 UGGCUG-CGGAAUCGAACAAUGCUGAAAAUGUAAAAGGCGAGAAUGCAAAAAAUCGCCGCCCCCAUGUAGGUGGUGGCUAAAAUGUUAAACGGAGCCCCAAAAGGCAAUUA .((((.-((......((((.................(((((............)))))(((.((((....)))).))).....))))...)).)))).............. ( -28.80) >DroEre_CAF1 14873 99 + 1 UGGCCG-CCCAAUCGAACAAUGCUGAAAAUGUAAAA--------UGCGAAAAAUCGCCGCCUCC--GUUGGCGGUGGCCAAAAUGUUAAACGGAGCCCCG-AAGGCAAUUA ((((((-((...........................--------.((((....)))).(((...--...)))))))))))...((((...(((....)))-..)))).... ( -29.40) >consensus UGGCUG_CGGAAUCGAACAAUGCUGAAAAUGUAAAAGGCGAGAAUGCAAAAAAUCGCCGCCCCCAUGUAGGUGGUGGCUAAAAUGUUAAACGGAGCCCCAAAAGGCAAUUA ((((((.((...(((.....(((.......))).....)))...))))......(((((((........)))))))))))..............(((......)))..... (-22.08 = -21.95 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:33 2006